Strain Fitness in Pseudomonas putida KT2440 around PP_5035

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
5,737,252	+		PP_5033	0.88	+0.3
5,737,253	-		PP_5033	0.88	-0.4
5,737,253	-		PP_5033	0.88	-1.0
5,737,291	+				-0.5
5,737,292	-				-0.5
5,737,293	+				+0.3
5,737,293	+				-0.6
5,737,294	-				+2.0
5,737,294	-				-2.3
5,737,426	+				+0.0
5,737,427	-				-0.3
5,737,427	-				+0.4
5,737,493	+				+0.2
5,737,494	-				+0.4
5,737,494	-				-1.6
5,737,495	+				-1.3
5,737,495	+				+1.0
5,737,509	+				+0.8
5,737,541	-				-0.3
5,737,572	+				+0.4
5,737,573	-				-0.4
5,737,573	-				+1.0
5,737,585	-				+1.0
5,737,769	+		PP_5034	0.21	-0.8
5,737,769	+		PP_5034	0.21	+1.5
5,737,770	-		PP_5034	0.21	+1.2
5,737,826	-		PP_5034	0.31	-0.1
5,737,826	-		PP_5034	0.31	-0.3
5,737,826	-		PP_5034	0.31	-1.2
5,737,882	+		PP_5034	0.41	-1.1
5,737,882	+		PP_5034	0.41	+0.1
5,737,882	+		PP_5034	0.41	-0.5
5,737,882	+		PP_5034	0.41	-0.5
5,737,882	+		PP_5034	0.41	-0.1
5,737,882	+		PP_5034	0.41	+0.5
5,737,882	+		PP_5034	0.41	+0.5
5,737,883	-		PP_5034	0.41	-0.6
5,737,883	-		PP_5034	0.41	-0.8
5,737,883	-		PP_5034	0.41	-1.6
5,738,427	+		PP_5035	0.28	-2.8
5,738,427	+		PP_5035	0.28	-2.3
5,738,428	-		PP_5035	0.28	-0.4
5,738,428	-		PP_5035	0.28	-0.9
5,738,428	-		PP_5035	0.28	-1.9
5,738,428	-		PP_5035	0.28	-0.8
5,738,433	+		PP_5035	0.29	-2.2
5,738,433	+		PP_5035	0.29	-1.7
5,738,433	+		PP_5035	0.29	-1.5
5,738,434	-		PP_5035	0.29	-2.6
5,738,434	-		PP_5035	0.29	+0.1
5,738,493	+		PP_5035	0.37	-2.8
5,738,493	+		PP_5035	0.37	-1.6
5,738,494	-		PP_5035	0.37	-0.9
5,738,635	+		PP_5035	0.56	-1.3
5,738,635	+		PP_5035	0.56	-1.9
5,738,635	+		PP_5035	0.56	-1.3
5,738,636	-		PP_5035	0.56	-1.2
5,738,636	-		PP_5035	0.56	-0.9
5,738,902	-				+1.3
5,739,040	+				-0.9
5,739,042	+				+0.4
5,739,055	+				-0.2
5,739,102	+				-0.3
5,739,103	-				+0.7
5,739,103	-				-3.3
5,739,106	+				-0.3
5,739,106	+				-0.4
5,739,107	-				-2.2
5,739,131	-				-2.2
5,739,327	-		PP_5036	0.19	-0.3
5,739,383	+		PP_5036	0.23	-1.2
5,739,384	-		PP_5036	0.23	-1.3
5,739,384	-		PP_5036	0.23	-1.4
5,739,431	+		PP_5036	0.26	+1.3
5,739,432	-		PP_5036	0.26	+0.2
5,739,545	+		PP_5036	0.35	+0.6
5,739,546	-		PP_5036	0.35	+0.7
5,739,546	-		PP_5036	0.35	-0.5
5,739,618	-		PP_5036	0.40	-0.2
5,739,618	-		PP_5036	0.40	-1.2
5,739,618	-		PP_5036	0.40	-1.4
5,739,763	+		PP_5036	0.51	-0.5
5,739,840	-		PP_5036	0.56	-0.8
5,739,877	-		PP_5036	0.59	-0.6
5,739,884	-		PP_5036	0.60	-0.4