Experiment: L-Phenylalanine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_4496 and PP_4497 are separated by 265 nucleotides PP_4497 and PP_4498 overlap by 14 nucleotides PP_4498 and PP_4499 overlap by 37 nucleotides
PP_4496: PP_4496 - 23S rRNA pseudouridine 2605 synthase, at 5,111,344 to 5,112,411
_4496
PP_4497: PP_4497 - conserved protein of unknown function, at 5,112,677 to 5,113,444
_4497
PP_4498: PP_4498 - Segregation and condensation protein A, at 5,113,431 to 5,114,318
_4498
PP_4499: PP_4499 - putative maturation enzyme, at 5,114,282 to 5,114,947
_4499
Position (kb) 5112
5113
5114 Strain fitness (log2 ratio) -2
-1
0
1
2 at 5111.822 kb on + strand at 5111.951 kb on - strand, within PP_4496 at 5111.976 kb on - strand, within PP_4496 at 5112.162 kb on - strand at 5112.162 kb on - strand, within PP_4496 at 5112.383 kb on + strand at 5112.384 kb on - strand at 5112.430 kb on - strand at 5112.430 kb on - strand at 5112.513 kb on + strand at 5112.591 kb on + strand at 5112.592 kb on - strand at 5112.623 kb on - strand at 5113.069 kb on + strand, within PP_4497 at 5113.069 kb on + strand, within PP_4497 at 5113.069 kb on + strand, within PP_4497 at 5113.070 kb on - strand, within PP_4497 at 5113.070 kb on - strand, within PP_4497 at 5113.131 kb on + strand, within PP_4497 at 5113.215 kb on + strand, within PP_4497 at 5113.215 kb on + strand, within PP_4497 at 5113.215 kb on + strand, within PP_4497 at 5113.215 kb on + strand, within PP_4497 at 5113.215 kb on + strand, within PP_4497 at 5113.216 kb on - strand, within PP_4497 at 5113.356 kb on + strand, within PP_4497 at 5113.357 kb on - strand, within PP_4497 at 5113.773 kb on + strand, within PP_4498 at 5113.773 kb on + strand, within PP_4498 at 5113.870 kb on + strand, within PP_4498 at 5113.870 kb on + strand, within PP_4498 at 5113.871 kb on - strand, within PP_4498 at 5113.991 kb on - strand, within PP_4498 at 5114.013 kb on + strand, within PP_4498 at 5114.014 kb on - strand, within PP_4498 at 5114.014 kb on - strand, within PP_4498 at 5114.035 kb on + strand, within PP_4498 at 5114.035 kb on + strand, within PP_4498 at 5114.036 kb on - strand, within PP_4498 at 5114.036 kb on - strand, within PP_4498 at 5114.036 kb on - strand, within PP_4498 at 5114.044 kb on + strand at 5114.044 kb on + strand, within PP_4498 at 5114.044 kb on + strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.045 kb on - strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.087 kb on + strand, within PP_4498 at 5114.107 kb on + strand, within PP_4498 at 5114.173 kb on + strand, within PP_4498 at 5114.173 kb on + strand, within PP_4498 at 5114.173 kb on + strand, within PP_4498 at 5114.174 kb on - strand, within PP_4498 at 5114.174 kb on - strand, within PP_4498 at 5114.209 kb on + strand, within PP_4498
Per-strain Table
Position Strand Gene LocusTag Fraction L-Phenylalanine 5 mM (C) remove 5,111,822 + +1.3 5,111,951 - PP_4496 0.57 +0.3 5,111,976 - PP_4496 0.59 +1.3 5,112,162 - +1.3 5,112,162 - PP_4496 0.77 +0.3 5,112,383 + +2.3 5,112,384 - -1.2 5,112,430 - +1.0 5,112,430 - -0.9 5,112,513 + +0.2 5,112,591 + +0.6 5,112,592 - +1.3 5,112,623 - -0.6 5,113,069 + PP_4497 0.51 -0.5 5,113,069 + PP_4497 0.51 +0.2 5,113,069 + PP_4497 0.51 +0.3 5,113,070 - PP_4497 0.51 +0.8 5,113,070 - PP_4497 0.51 -1.2 5,113,131 + PP_4497 0.59 +0.7 5,113,215 + PP_4497 0.70 -0.4 5,113,215 + PP_4497 0.70 -2.4 5,113,215 + PP_4497 0.70 +1.5 5,113,215 + PP_4497 0.70 -0.1 5,113,215 + PP_4497 0.70 -0.5 5,113,216 - PP_4497 0.70 -0.0 5,113,356 + PP_4497 0.88 -1.0 5,113,357 - PP_4497 0.89 -0.2 5,113,773 + PP_4498 0.39 +1.0 5,113,773 + PP_4498 0.39 -0.7 5,113,870 + PP_4498 0.49 +0.2 5,113,870 + PP_4498 0.49 -1.5 5,113,871 - PP_4498 0.50 -0.5 5,113,991 - PP_4498 0.63 -0.6 5,114,013 + PP_4498 0.66 -1.5 5,114,014 - PP_4498 0.66 -1.4 5,114,014 - PP_4498 0.66 +0.4 5,114,035 + PP_4498 0.68 +0.6 5,114,035 + PP_4498 0.68 +0.3 5,114,036 - PP_4498 0.68 -0.9 5,114,036 - PP_4498 0.68 +0.4 5,114,036 - PP_4498 0.68 +0.3 5,114,044 + -0.0 5,114,044 + PP_4498 0.69 -2.1 5,114,044 + PP_4498 0.69 -1.6 5,114,045 - PP_4498 0.69 -0.0 5,114,045 - PP_4498 0.69 +0.5 5,114,045 - PP_4498 0.69 -0.8 5,114,045 - PP_4498 0.69 -1.2 5,114,087 + PP_4498 0.74 +1.3 5,114,087 + PP_4498 0.74 -1.2 5,114,087 + PP_4498 0.74 +0.3 5,114,087 + PP_4498 0.74 -1.3 5,114,107 + PP_4498 0.76 -0.3 5,114,173 + PP_4498 0.84 -0.4 5,114,173 + PP_4498 0.84 +0.9 5,114,173 + PP_4498 0.84 +0.8 5,114,174 - PP_4498 0.84 +1.0 5,114,174 - PP_4498 0.84 +0.2 5,114,209 + PP_4498 0.88 -0.3
Or see this region's nucleotide sequence