Strain Fitness in Pseudomonas putida KT2440 around PP_4333

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,922,458	+		PP_4331	0.19	+0.0
4,922,610	+		PP_4331	0.58	-1.2
4,922,611	-		PP_4331	0.58	-0.3
4,922,706	+		PP_4331	0.82	-0.7
4,922,706	+		PP_4331	0.82	+1.3
4,922,706	+		PP_4331	0.82	-3.0
4,922,707	-		PP_4331	0.82	+1.5
4,922,707	-		PP_4331	0.82	+0.0
4,922,707	-		PP_4331	0.82	-0.7
4,922,707	-		PP_4331	0.82	+0.5
4,922,707	-		PP_4331	0.82	-1.4
4,922,768	+				+0.6
4,922,769	-				+0.8
4,922,877	+		PP_4332	0.21	-1.5
4,923,106	+		PP_4332	0.68	-3.4
4,923,106	+		PP_4332	0.68	-3.2
4,923,107	-		PP_4332	0.69	-0.2
4,923,206	+		PP_4332	0.89	-2.0
4,923,206	+		PP_4332	0.89	-2.0
4,923,263	+				-1.4
4,923,502	-		PP_4333	0.23	-1.9
4,923,502	-		PP_4333	0.23	-1.6
4,923,502	-		PP_4333	0.23	-1.9
4,923,522	+		PP_4333	0.25	-2.4
4,923,522	+		PP_4333	0.25	-1.6
4,923,522	+		PP_4333	0.25	-0.5
4,923,523	-		PP_4333	0.25	-0.9
4,923,678	+		PP_4333	0.42	-0.8
4,923,678	+		PP_4333	0.42	-2.7
4,923,678	+		PP_4333	0.42	-1.1
4,923,678	+		PP_4333	0.42	-1.8
4,923,678	+		PP_4333	0.42	-2.3
4,923,679	-		PP_4333	0.42	-1.5
4,923,794	+		PP_4333	0.55	-0.5
4,923,950	+		PP_4333	0.73	-1.3
4,924,144	-				-1.0
4,924,221	-				+0.1
4,924,221	-				-1.1
4,924,251	-				-0.8
4,924,341	-		PP_4334	0.17	-1.7
4,924,341	-		PP_4334	0.17	+0.4
4,924,341	-		PP_4334	0.17	-0.1
4,924,351	+		PP_4334	0.18	-2.7
4,924,351	+		PP_4334	0.18	-1.4
4,924,351	+		PP_4334	0.18	-2.9
4,924,351	+		PP_4334	0.18	-3.9
4,924,351	+		PP_4334	0.18	-2.0
4,924,351	+		PP_4334	0.18	-1.9
4,924,351	+		PP_4334	0.18	-2.2
4,924,351	+		PP_4334	0.18	-1.4
4,924,351	+		PP_4334	0.18	-1.2
4,924,351	+		PP_4334	0.18	-1.4
4,924,351	-		PP_4334	0.18	+0.2
4,924,352	-		PP_4334	0.18	+0.4
4,924,352	-		PP_4334	0.18	+1.5
4,924,352	-		PP_4334	0.18	-0.5
4,924,352	-		PP_4334	0.18	+0.5
4,924,364	+		PP_4334	0.20	-1.2
4,924,364	+		PP_4334	0.20	-1.5
4,924,365	-		PP_4334	0.20	-1.2
4,924,365	-		PP_4334	0.20	-0.7
4,924,365	-		PP_4334	0.20	-0.1
4,924,429	+		PP_4334	0.27	-0.5
4,924,430	-		PP_4334	0.27	+0.1
4,924,610	+		PP_4334	0.49	-2.6
4,924,610	+		PP_4334	0.49	-1.4
4,924,610	+		PP_4334	0.49	-0.2
4,924,652	-		PP_4334	0.53	+1.1
4,924,805	+		PP_4334	0.71	-0.5
4,924,805	+		PP_4334	0.71	-1.0
4,924,806	-		PP_4334	0.71	-2.9
4,924,806	-		PP_4334	0.71	-1.9
4,924,844	+		PP_4334	0.76	-1.6
4,924,844	+		PP_4334	0.76	-1.5
4,924,845	-		PP_4334	0.76	-0.9
4,924,929	+		PP_4334	0.86	-1.2
4,924,929	+		PP_4334	0.86	-3.0
4,924,929	+		PP_4334	0.86	-1.6
4,924,929	+		PP_4334	0.86	-1.0
4,924,929	+		PP_4334	0.86	-1.3
4,924,995	+				+0.1
4,924,995	+				-3.4
4,924,995	+				-2.2
4,924,995	+				+0.3
4,924,995	+				+0.1
4,924,996	-				-0.4
4,924,996	-				+0.5
4,924,996	-				-0.7
4,924,999	+				-1.4
4,924,999	+				-0.2
4,924,999	+				-1.4
4,924,999	+				-1.4
4,925,000	-				+0.3
4,925,000	-				+0.3
4,925,000	-				-0.4
4,925,056	+				-1.1
4,925,056	+				-1.2
4,925,056	+				-1.3
4,925,056	+				-1.1
4,925,056	+				-2.8
4,925,056	+				-2.2
4,925,057	-				+0.5
4,925,057	-				+0.3
4,925,069	-				-1.1
4,925,098	+				-2.9
4,925,098	+				-1.4
4,925,166	+				-1.3
4,925,192	+				-1.5
4,925,192	+				-1.2