Strain Fitness in Pseudomonas putida KT2440 around PP_3732

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
4,257,533	+				+1.2
4,257,534	-		PP_3730	0.88	-1.5
4,257,558	+				+0.4
4,257,559	-				-0.2
4,257,559	-				-0.3
4,257,651	+				-0.7
4,257,652	-				-0.1
4,257,652	-				-0.4
4,257,652	-				+0.2
4,257,652	-				-2.1
4,257,672	+				-0.2
4,257,673	-				+0.1
4,257,673	-				+0.8
4,257,906	+		PP_3731	0.33	-0.3
4,257,929	-		PP_3731	0.37	-2.9
4,257,938	-		PP_3731	0.38	-0.5
4,258,141	+		PP_3731	0.69	-0.9
4,258,141	+		PP_3731	0.69	+0.1
4,258,141	+		PP_3731	0.69	+0.3
4,258,141	+		PP_3731	0.69	-0.2
4,258,141	+		PP_3731	0.69	-0.2
4,258,141	+		PP_3731	0.69	-2.5
4,258,141	+		PP_3731	0.69	+0.3
4,258,141	+		PP_3731	0.69	-0.7
4,258,141	+		PP_3731	0.69	-1.3
4,258,141	+		PP_3731	0.69	-2.8
4,258,142	-		PP_3731	0.70	-0.7
4,258,142	-		PP_3731	0.70	+0.0
4,258,142	-		PP_3731	0.70	-0.7
4,258,142	-		PP_3731	0.70	-1.1
4,258,142	-		PP_3731	0.70	-0.7
4,258,142	-		PP_3731	0.70	-0.5
4,258,142	-		PP_3731	0.70	+1.1
4,258,142	-		PP_3731	0.70	-2.5
4,258,174	+		PP_3731	0.75	-1.2
4,258,318	+				+0.7
4,258,375	+				+0.3
4,258,398	-				-0.2
4,258,404	+				+1.2
4,258,405	-				+0.1
4,258,405	-				+0.6
4,258,547	+		PP_3732	0.12	+0.2
4,258,547	+		PP_3732	0.12	+0.4
4,258,547	+		PP_3732	0.12	+0.0
4,258,548	-		PP_3732	0.13	-1.7
4,258,548	-		PP_3732	0.13	+0.7
4,258,548	-		PP_3732	0.13	+0.8
4,258,548	-		PP_3732	0.13	-0.6
4,258,548	-		PP_3732	0.13	+0.3
4,259,065	+		PP_3732	0.82	-0.3
4,259,219	+				+1.6
4,259,219	+				-0.3
4,259,219	+				+1.8
4,259,255	+				+0.2
4,259,255	+				+0.0
4,259,255	+				-0.8
4,259,255	+				+1.2
4,259,256	-				-0.9
4,259,258	+				-1.0
4,259,277	-				-0.1
4,259,528	+		PP_3733	0.26	+1.2
4,259,529	-		PP_3733	0.26	-2.1
4,259,717	+		PP_3733	0.44	+0.4
4,259,735	+		PP_3733	0.45	+0.0
4,259,735	+		PP_3733	0.45	+2.2
4,259,736	-		PP_3733	0.46	+0.1
4,259,736	-		PP_3733	0.46	+1.0
4,259,736	-		PP_3733	0.46	-0.1
4,259,738	+		PP_3733	0.46	-1.8
4,259,738	+		PP_3733	0.46	-0.0
4,259,739	-		PP_3733	0.46	+0.9
4,259,739	-		PP_3733	0.46	-0.5
4,259,771	+		PP_3733	0.49	-1.1
4,259,825	+		PP_3733	0.54	-0.2
4,259,857	+		PP_3733	0.57	-1.1
4,259,857	+		PP_3733	0.57	+0.9
4,259,857	+		PP_3733	0.57	+0.0
4,259,857	+		PP_3733	0.57	-0.9
4,260,128	+		PP_3733	0.83	-0.9
4,260,128	+		PP_3733	0.83	-2.1
4,260,128	+		PP_3733	0.83	-0.8
4,260,128	+		PP_3733	0.83	-1.3
4,260,129	-		PP_3733	0.83	-0.4
4,260,129	-		PP_3733	0.83	+0.9