Strain Fitness in Pseudomonas putida KT2440 around PP_3527

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,997,364	+				-1.9
3,997,364	+				+0.4
3,997,365	-				+0.8
3,997,365	-				-0.3
3,997,466	+		PP_3526	0.15	+0.2
3,997,466	+		PP_3526	0.15	-0.2
3,997,466	+		PP_3526	0.15	-0.7
3,997,466	+		PP_3526	0.15	-0.3
3,997,467	-		PP_3526	0.15	-0.6
3,997,467	-		PP_3526	0.15	-0.4
3,997,667	+		PP_3526	0.35	-1.2
3,997,753	+		PP_3526	0.43	+0.5
3,997,754	-		PP_3526	0.44	-1.2
3,997,834	-		PP_3526	0.51	-0.1
3,997,834	-		PP_3526	0.51	+0.0
3,997,912	+		PP_3526	0.59	-0.2
3,997,912	+		PP_3526	0.59	+0.2
3,997,969	+		PP_3526	0.65	+1.0
3,998,083	+		PP_3526	0.76	-0.1
3,998,152	+		PP_3526	0.83	+0.5
3,998,152	+		PP_3526	0.83	-0.9
3,998,155	+		PP_3526	0.83	+0.3
3,998,155	+		PP_3526	0.83	+0.3
3,998,155	+		PP_3526	0.83	-0.7
3,998,156	-		PP_3526	0.83	-1.1
3,998,197	+		PP_3526	0.88	-0.2
3,998,197	+		PP_3526	0.88	+0.5
3,998,198	-		PP_3526	0.88	-0.2
3,998,269	+				-0.8
3,998,270	-				+0.3
3,998,270	-				+0.2
3,998,270	-				+0.2
3,998,270	-				+0.4
3,998,278	+				+0.9
3,998,366	+				-2.4
3,998,430	+		PP_3527	0.10	-2.4
3,998,431	-		PP_3527	0.10	-1.0
3,998,431	-		PP_3527	0.10	-1.5
3,998,431	-		PP_3527	0.10	-1.2
3,998,494	+		PP_3527	0.19	-3.2
3,998,495	-		PP_3527	0.20	-3.6
3,998,495	-		PP_3527	0.20	-1.3
3,998,644	+		PP_3527	0.41	-1.3
3,998,645	-		PP_3527	0.42	-1.8
3,998,654	-		PP_3527	0.43	-0.9
3,998,654	-		PP_3527	0.43	-1.6
3,998,801	-		PP_3527	0.64	-1.8
3,998,824	+				-0.3
3,998,824	+		PP_3527	0.68	-1.6
3,998,824	+		PP_3527	0.68	-0.8
3,998,825	-		PP_3527	0.68	+0.5
3,998,848	+		PP_3527	0.71	-1.7
3,998,849	-		PP_3527	0.71	-2.6
3,998,851	+		PP_3527	0.72	-1.7
3,998,852	-		PP_3527	0.72	-2.7
3,998,852	-		PP_3527	0.72	-0.2
3,998,852	-		PP_3527	0.72	-1.9
3,998,854	+		PP_3527	0.72	-2.2
3,998,854	+		PP_3527	0.72	-2.7
3,998,855	-		PP_3527	0.72	-1.9
3,998,855	-		PP_3527	0.72	-1.0
3,998,855	-		PP_3527	0.72	-3.3
3,998,855	-		PP_3527	0.72	-1.6
3,998,855	-		PP_3527	0.72	-2.1
3,998,855	-		PP_3527	0.72	-1.6
3,998,855	-		PP_3527	0.72	-2.7
3,999,031	-				-2.1
3,999,045	-				-0.7
3,999,064	-				+0.1
3,999,064	-				-1.4
3,999,185	-				+0.1
3,999,185	-				-1.0
3,999,199	-				-0.2
3,999,277	+				-0.5
3,999,371	+				-2.1
3,999,560	+		PP_3528	0.25	-0.3
3,999,561	-		PP_3528	0.25	+0.7
3,999,674	-		PP_3528	0.36	+0.1
3,999,778	+		PP_3528	0.47	+0.5
3,999,792	-		PP_3528	0.48	+0.9
3,999,817	+		PP_3528	0.51	+0.7
3,999,818	-		PP_3528	0.51	+0.3
3,999,828	+		PP_3528	0.52	-3.3
3,999,838	+		PP_3528	0.53	+0.9
3,999,991	+		PP_3528	0.68	+1.6
3,999,991	+		PP_3528	0.68	-0.4
3,999,991	+		PP_3528	0.68	+0.1
3,999,992	-		PP_3528	0.68	-0.8
3,999,992	-		PP_3528	0.68	+0.4
3,999,992	-		PP_3528	0.68	-0.6
3,999,992	-		PP_3528	0.68	-0.0
3,999,992	-		PP_3528	0.68	-0.2
3,999,992	-		PP_3528	0.68	+0.2