Strain Fitness in Pseudomonas putida KT2440 around PP_3435

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,890,129	+		PP_3433	0.45	-3.3
3,890,129	+		PP_3433	0.45	-3.3
3,890,150	+		PP_3433	0.47	-1.7
3,890,184	-		PP_3433	0.50	-3.4
3,890,206	-		PP_3433	0.52	-3.7
3,890,206	-		PP_3433	0.52	-2.9
3,890,217	-		PP_3433	0.53	-3.2
3,890,224	-		PP_3433	0.54	-2.7
3,890,306	+		PP_3433	0.62	-3.6
3,890,306	+		PP_3433	0.62	-2.3
3,890,306	+		PP_3433	0.62	-2.0
3,890,307	-		PP_3433	0.62	-2.3
3,890,310	+		PP_3433	0.62	-3.2
3,890,310	+		PP_3433	0.62	-4.2
3,890,342	+		PP_3433	0.65	-1.5
3,890,343	-		PP_3433	0.65	-3.0
3,890,343	-		PP_3433	0.65	-3.3
3,890,343	-		PP_3433	0.65	-4.4
3,890,444	+		PP_3433	0.74	-2.3
3,890,445	-		PP_3433	0.75	-1.1
3,890,445	-		PP_3433	0.75	-3.0
3,890,445	-		PP_3433	0.75	-2.5
3,890,485	+		PP_3433	0.78	-2.1
3,890,514	-		PP_3433	0.81	-3.4
3,890,638	+				-3.5
3,890,639	-				-3.2
3,890,641	+				-2.9
3,890,641	+				-2.6
3,890,642	-				-3.0
3,890,709	+				-3.6
3,890,709	+				-3.4
3,890,709	+				-2.3
3,890,709	+				-3.8
3,890,709	+				-1.8
3,890,709	+				-2.5
3,890,710	-				-2.8
3,890,815	+		PP_3434	0.65	-2.5
3,890,823	+		PP_3434	0.72	-2.1
3,890,824	-		PP_3434	0.73	-3.8
3,890,844	+				-1.8
3,890,845	+				-0.1
3,890,845	+				-2.9
3,890,845	+				-3.8
3,890,846	-				+0.2
3,890,846	-				-2.6
3,890,846	-				-0.9
3,890,846	-				-2.8
3,890,846	-				-2.1
3,890,852	+				-3.4
3,890,852	+				-1.8
3,890,852	+				-2.9
3,890,853	-				-3.8
3,890,853	-				-2.8
3,890,853	-				-3.4
3,890,853	-				-3.5
3,890,853	-				-3.5
3,890,853	-				-0.9
3,890,853	-				-0.1
3,890,898	+				-3.7
3,890,898	+				-2.9
3,890,899	-				-1.8
3,890,899	-				-0.7
3,890,899	-				-1.8
3,890,981	-				-2.0
3,891,004	+				-3.5
3,891,026	-				-0.9
3,891,225	+		PP_3435	0.13	-2.6
3,891,335	+		PP_3435	0.20	-0.8
3,891,336	-		PP_3435	0.20	-0.1
3,891,386	+		PP_3435	0.23	-0.7
3,891,387	-		PP_3435	0.23	+1.7
3,891,403	-		PP_3435	0.24	-1.1
3,891,452	+		PP_3435	0.27	+0.4
3,891,453	-		PP_3435	0.27	-0.4
3,891,453	-		PP_3435	0.27	-0.4
3,891,674	+		PP_3435	0.41	-1.9
3,891,702	+		PP_3435	0.43	+0.2
3,891,702	+		PP_3435	0.43	+0.4
3,891,703	-		PP_3435	0.43	-0.1
3,891,956	+		PP_3435	0.59	+0.4
3,891,967	+		PP_3435	0.60	-1.8
3,891,967	+		PP_3435	0.60	-0.6
3,891,967	+		PP_3435	0.60	-1.0
3,891,968	-		PP_3435	0.60	-0.3
3,892,009	+				+0.7
3,892,009	+		PP_3435	0.63	-0.4
3,892,010	-		PP_3435	0.63	-0.8
3,892,010	-		PP_3435	0.63	-0.7
3,892,031	+		PP_3435	0.64	+0.0
3,892,195	+		PP_3435	0.74	-1.5
3,892,195	+		PP_3435	0.74	-1.2
3,892,289	+		PP_3435	0.80	+0.1
3,892,289	+		PP_3435	0.80	-0.1
3,892,290	-		PP_3435	0.80	-0.6
3,892,290	-		PP_3435	0.80	-1.1
3,892,313	+		PP_3435	0.82	-0.9
3,892,374	+		PP_3435	0.86	-1.3
3,892,374	+		PP_3435	0.86	+0.7
3,892,457	+				+2.2
3,892,494	-				+0.2
3,892,691	+				+0.8
3,892,691	+				+0.3
3,892,691	+				-0.6
3,892,692	-				-0.6
3,892,692	-				+1.5
3,892,692	-				+0.6
3,892,692	-				-0.2
3,892,697	+				+0.9
3,892,697	+				-0.4
3,892,697	+				-0.0
3,892,697	+				+0.0
3,892,698	-				+0.2
3,892,698	-				+0.2
3,892,698	-				+0.6
3,892,698	-				-0.4
3,892,698	-				-0.1
3,892,698	-				+0.1
3,892,699	+				-0.6
3,892,700	-				-0.2
3,892,700	-				+0.1
3,892,700	-				-0.5
3,892,700	-				+0.3
3,892,700	-				-0.8
3,892,950	-		PP_3436	0.35	-2.6
3,892,992	+		PP_3436	0.40	+0.1
3,892,992	+		PP_3436	0.40	-0.8
3,892,992	+		PP_3436	0.40	+0.5
3,892,992	+		PP_3436	0.40	-0.1
3,892,993	-		PP_3436	0.40	-0.3
3,892,994	+		PP_3436	0.40	-0.1
3,892,994	+		PP_3436	0.40	-1.5
3,893,123	+		PP_3436	0.55	+0.2
3,893,208	-		PP_3436	0.64	-0.5
3,893,264	+		PP_3436	0.71	+0.1
3,893,265	-		PP_3436	0.71	+1.2
3,893,308	+		PP_3436	0.76	-0.0
3,893,315	+		PP_3436	0.76	+0.4
3,893,316	-		PP_3436	0.76	+0.5
3,893,367	-		PP_3436	0.82	-0.1
3,893,441	+				-0.1
3,893,442	-				+0.8
3,893,442	-				-0.3
3,893,442	-				+0.7
3,893,463	+				+0.3
3,893,464	-				+0.3
3,893,500	-				-0.8
3,893,523	-				+0.9
3,893,538	+				-0.2