Strain Fitness in Pseudomonas putida KT2440 around PP_3433

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
3,888,680	+				-0.7
3,888,680	+				-0.5
3,888,684	+				+1.1
3,888,730	-				+1.1
3,888,750	+				-0.5
3,888,751	-				+1.1
3,888,751	-				-2.1
3,888,754	+				+1.0
3,888,754	+				-0.5
3,888,755	-				+0.1
3,888,755	-				+0.2
3,888,803	+				-1.2
3,888,803	+				-0.2
3,888,803	+				-0.1
3,888,803	+				+0.1
3,888,803	+				-0.5
3,888,804	-				-1.3
3,888,804	-				-0.1
3,888,804	-				-1.2
3,888,806	+				+0.8
3,888,806	+				-1.1
3,888,811	+				+0.3
3,888,811	+				-2.0
3,888,811	+				-0.2
3,888,811	+				-0.1
3,888,812	-				+0.1
3,888,812	-				-0.2
3,888,812	-				-0.6
3,888,812	-				-2.9
3,889,045	+		PP_3432	0.29	+0.4
3,889,127	+		PP_3432	0.39	-1.2
3,889,127	+		PP_3432	0.39	-0.6
3,889,128	-		PP_3432	0.39	+0.1
3,889,160	+		PP_3432	0.43	-1.5
3,889,161	-		PP_3432	0.43	+0.4
3,889,202	+		PP_3432	0.48	-0.1
3,889,264	+		PP_3432	0.56	-0.3
3,889,264	+		PP_3432	0.56	+0.2
3,889,264	+		PP_3432	0.56	+0.8
3,889,264	+		PP_3432	0.56	+0.1
3,889,265	-		PP_3432	0.56	+0.1
3,889,283	+		PP_3432	0.58	+0.4
3,889,283	+		PP_3432	0.58	+0.1
3,889,284	-		PP_3432	0.58	+0.2
3,889,284	-		PP_3432	0.58	+0.0
3,889,358	+		PP_3432	0.68	-2.0
3,889,358	+		PP_3432	0.68	+0.6
3,889,358	+		PP_3432	0.68	-0.6
3,889,358	+		PP_3432	0.68	+0.1
3,889,359	-		PP_3432	0.68	-1.6
3,889,359	-		PP_3432	0.68	-0.5
3,889,362	+		PP_3432	0.68	+1.2
3,889,362	+		PP_3432	0.68	+0.9
3,889,362	+		PP_3432	0.68	-0.4
3,889,362	+		PP_3432	0.68	-0.8
3,889,362	+		PP_3432	0.68	-1.1
3,889,417	+		PP_3432	0.75	+0.1
3,889,418	-		PP_3432	0.75	-0.1
3,889,440	-		PP_3432	0.78	+0.1
3,889,445	+		PP_3432	0.78	-0.1
3,889,491	+				+4.2
3,889,628	+				-2.3
3,889,628	+				-3.2
3,889,628	+				-2.9
3,889,670	-				-2.1
3,889,905	-		PP_3433	0.24	-2.6
3,889,905	-		PP_3433	0.24	-3.3
3,890,129	+		PP_3433	0.45	-3.3
3,890,129	+		PP_3433	0.45	-3.3
3,890,150	+		PP_3433	0.47	-1.7
3,890,184	-		PP_3433	0.50	-3.4
3,890,206	-		PP_3433	0.52	-3.7
3,890,206	-		PP_3433	0.52	-2.9
3,890,217	-		PP_3433	0.53	-3.2
3,890,224	-		PP_3433	0.54	-2.7
3,890,306	+		PP_3433	0.62	-3.6
3,890,306	+		PP_3433	0.62	-2.3
3,890,306	+		PP_3433	0.62	-2.0
3,890,307	-		PP_3433	0.62	-2.3
3,890,310	+		PP_3433	0.62	-3.2
3,890,310	+		PP_3433	0.62	-4.2
3,890,342	+		PP_3433	0.65	-1.5
3,890,343	-		PP_3433	0.65	-3.0
3,890,343	-		PP_3433	0.65	-3.3
3,890,343	-		PP_3433	0.65	-4.4
3,890,444	+		PP_3433	0.74	-2.3
3,890,445	-		PP_3433	0.75	-1.1
3,890,445	-		PP_3433	0.75	-3.0
3,890,445	-		PP_3433	0.75	-2.5
3,890,485	+		PP_3433	0.78	-2.1
3,890,514	-		PP_3433	0.81	-3.4
3,890,638	+				-3.5
3,890,639	-				-3.2
3,890,641	+				-2.9
3,890,641	+				-2.6
3,890,642	-				-3.0
3,890,709	+				-3.6
3,890,709	+				-3.4
3,890,709	+				-2.3
3,890,709	+				-3.8
3,890,709	+				-1.8
3,890,709	+				-2.5
3,890,710	-				-2.8
3,890,815	+		PP_3434	0.65	-2.5
3,890,823	+		PP_3434	0.72	-2.1
3,890,824	-		PP_3434	0.73	-3.8
3,890,844	+				-1.8
3,890,845	+				-0.1
3,890,845	+				-2.9
3,890,845	+				-3.8
3,890,846	-				+0.2
3,890,846	-				-2.6
3,890,846	-				-0.9
3,890,846	-				-2.8
3,890,846	-				-2.1
3,890,852	+				-3.4
3,890,852	+				-1.8
3,890,852	+				-2.9
3,890,853	-				-3.8
3,890,853	-				-2.8
3,890,853	-				-3.4
3,890,853	-				-3.5
3,890,853	-				-3.5
3,890,853	-				-0.9
3,890,853	-				-0.1
3,890,898	+				-3.7
3,890,898	+				-2.9
3,890,899	-				-1.8
3,890,899	-				-0.7
3,890,899	-				-1.8
3,890,981	-				-2.0
3,891,004	+				-3.5
3,891,026	-				-0.9
3,891,225	+		PP_3435	0.13	-2.6
3,891,335	+		PP_3435	0.20	-0.8
3,891,336	-		PP_3435	0.20	-0.1
3,891,386	+		PP_3435	0.23	-0.7
3,891,387	-		PP_3435	0.23	+1.7
3,891,403	-		PP_3435	0.24	-1.1
3,891,452	+		PP_3435	0.27	+0.4
3,891,453	-		PP_3435	0.27	-0.4
3,891,453	-		PP_3435	0.27	-0.4
3,891,674	+		PP_3435	0.41	-1.9
3,891,702	+		PP_3435	0.43	+0.2
3,891,702	+		PP_3435	0.43	+0.4
3,891,703	-		PP_3435	0.43	-0.1