Strain Fitness in Pseudomonas putida KT2440 around PP_2047

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
2,327,622	+		PP_2046	0.23	-2.8
2,327,636	-		PP_2046	0.25	-0.4
2,327,636	-		PP_2046	0.25	+0.4
2,327,638	-		PP_2046	0.25	-0.4
2,327,948	+		PP_2046	0.59	-0.3
2,327,948	+		PP_2046	0.59	-2.3
2,328,242	+				-1.0
2,328,242	+				+0.6
2,328,365	+				-0.9
2,328,365	+				-1.0
2,328,366	-				+0.3
2,328,366	-				-0.8
2,328,366	-				-0.3
2,328,385	+				+0.3
2,328,385	+				-0.3
2,328,385	+				-0.2
2,328,385	+				-0.4
2,328,385	+				-0.4
2,328,385	+				-0.1
2,328,386	-				+0.2
2,328,386	-				+0.8
2,328,389	+				+0.1
2,328,389	+				-1.3
2,328,389	+				-0.5
2,328,390	-				-0.8
2,328,390	-				-1.3
2,328,418	+				+0.2
2,328,418	+				-2.5
2,328,419	-				-2.8
2,328,451	-				+1.5
2,328,451	-				+1.5
2,328,695	+		PP_2047	0.23	-1.5
2,329,010	+		PP_2047	0.48	-0.1
2,329,011	-		PP_2047	0.48	-0.2
2,329,011	-		PP_2047	0.48	+0.2
2,329,072	-		PP_2047	0.53	+0.2
2,329,072	-		PP_2047	0.53	+1.2
2,329,195	+		PP_2047	0.63	+0.4
2,329,196	-		PP_2047	0.63	-0.6
2,329,244	+		PP_2047	0.67	-0.3
2,329,245	-		PP_2047	0.67	+0.1
2,329,245	-		PP_2047	0.67	-0.5
2,329,254	-		PP_2047	0.68	+0.1
2,329,547	+				+0.4
2,329,548	-				+0.1
2,329,551	+				+0.8
2,329,552	-				-0.4
2,329,654	+				+0.5
2,329,654	+				-0.1
2,329,655	-				+0.9
2,329,655	-				+0.7
2,329,886	-		PP_2048	0.13	-0.1
2,329,894	+		PP_2048	0.14	+0.6
2,329,894	+		PP_2048	0.14	+0.5
2,329,895	-		PP_2048	0.14	+0.7
2,329,936	+		PP_2048	0.16	-1.4
2,329,937	-		PP_2048	0.16	+1.7
2,329,937	-		PP_2048	0.16	-0.1
2,330,018	-		PP_2048	0.21	-0.1
2,330,018	-		PP_2048	0.21	-0.7
2,330,086	+		PP_2048	0.25	-1.3
2,330,087	-		PP_2048	0.25	-0.2
2,330,097	+		PP_2048	0.25	+0.1
2,330,097	+		PP_2048	0.25	-0.9
2,330,098	-		PP_2048	0.25	-0.3
2,330,203	+		PP_2048	0.31	+1.0
2,330,203	+		PP_2048	0.31	-0.1
2,330,204	-		PP_2048	0.31	-0.7
2,330,225	+		PP_2048	0.32	-1.7
2,330,225	+		PP_2048	0.32	+0.4
2,330,226	-		PP_2048	0.33	-0.3
2,330,226	-		PP_2048	0.33	-1.8
2,330,276	+		PP_2048	0.35	+2.9
2,330,538	+		PP_2048	0.50	-0.3
2,330,539	-		PP_2048	0.50	-0.8