Strain Fitness in Pseudomonas putida KT2440 around PP_1755

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,956,694	+		PP_1754	0.24	-0.9
1,956,695	-		PP_1754	0.24	-0.3
1,956,702	+		PP_1754	0.25	+0.9
1,956,702	+		PP_1754	0.25	+1.9
1,956,702	+		PP_1754	0.25	-0.3
1,956,719	+		PP_1754	0.26	-0.6
1,956,753	+		PP_1754	0.29	-0.2
1,956,753	+		PP_1754	0.29	-0.0
1,956,753	+		PP_1754	0.29	-0.4
1,956,828	+		PP_1754	0.36	-0.8
1,956,902	+		PP_1754	0.42	-1.0
1,956,902	+		PP_1754	0.42	-1.3
1,956,940	-		PP_1754	0.45	+0.0
1,956,986	-				-0.3
1,956,986	-		PP_1754	0.49	-1.2
1,957,050	+		PP_1754	0.55	+0.1
1,957,098	-		PP_1754	0.59	-0.8
1,957,152	+		PP_1754	0.64	+0.2
1,957,159	+		PP_1754	0.64	+0.7
1,957,166	-		PP_1754	0.65	+0.5
1,957,216	+		PP_1754	0.69	-0.7
1,957,216	+		PP_1754	0.69	+0.9
1,957,216	+		PP_1754	0.69	-0.0
1,957,233	+		PP_1754	0.71	+0.1
1,957,233	+		PP_1754	0.71	+0.4
1,957,234	-		PP_1754	0.71	+0.1
1,957,276	+		PP_1754	0.74	+0.2
1,957,277	-		PP_1754	0.75	+1.1
1,957,371	+		PP_1754	0.83	+0.1
1,957,372	-		PP_1754	0.83	-0.9
1,957,423	+		PP_1754	0.87	+0.0
1,957,432	+		PP_1754	0.88	-0.1
1,957,432	+		PP_1754	0.88	-0.6
1,957,433	-		PP_1754	0.88	+0.1
1,957,513	+				+0.1
1,957,513	+				+0.1
1,957,514	-				-0.8
1,957,514	-				+0.3
1,957,540	+				-0.2
1,957,670	+				+1.3
1,957,670	+				-0.4
1,957,784	+				-0.3
1,957,784	+				+1.2
1,957,785	-				-0.1
1,957,785	-				-0.9
1,957,818	-		PP_1755	0.11	+1.1
1,957,824	+		PP_1755	0.11	-1.0
1,957,824	+		PP_1755	0.11	-0.2
1,957,824	+		PP_1755	0.11	+0.1
1,957,825	-		PP_1755	0.11	+0.6
1,957,825	-		PP_1755	0.11	-2.3
1,957,968	+		PP_1755	0.21	-0.9
1,958,050	+		PP_1755	0.27	-0.2
1,958,050	+		PP_1755	0.27	+0.7
1,958,050	+		PP_1755	0.27	+0.3
1,958,441	+		PP_1755	0.55	+0.4
1,958,442	-		PP_1755	0.55	-0.2
1,958,485	-		PP_1755	0.58	+0.1
1,958,524	+		PP_1755	0.61	+1.4
1,958,686	+		PP_1755	0.73	+1.0
1,958,687	-		PP_1755	0.73	-1.9
1,959,008	+				+0.1
1,959,068	+				+0.8
1,959,082	+				-1.0
1,959,083	-				-1.3
1,959,177	+				+0.3
1,959,177	+				+0.1
1,959,178	-				+0.7
1,959,178	-				+0.1
1,959,277	-		PP_1756	0.11	-0.3
1,959,277	-		PP_1756	0.11	+0.2
1,959,277	-		PP_1756	0.11	-1.3
1,959,359	+		PP_1756	0.27	-0.6
1,959,359	+		PP_1756	0.27	-0.5
1,959,360	-		PP_1756	0.27	+0.3
1,959,360	-		PP_1756	0.27	-1.3
1,959,515	+		PP_1756	0.57	+1.0
1,959,515	+		PP_1756	0.57	-0.3
1,959,515	+		PP_1756	0.57	-0.6
1,959,564	-		PP_1756	0.66	-2.4
1,959,745	-				-0.4
1,959,745	-				-0.7
1,959,771	-				-1.0
1,959,858	+		PP_1757	0.35	-0.4
1,959,858	+		PP_1757	0.35	-0.0
1,959,859	-		PP_1757	0.36	-1.4
1,959,925	-		PP_1757	0.58	+3.3
1,959,925	-		PP_1757	0.58	-0.0
1,959,925	-		PP_1757	0.58	-0.8
1,959,925	-		PP_1757	0.58	-1.4
1,959,979	-		PP_1757	0.76	+0.6
1,959,979	-		PP_1757	0.76	+0.2