Strain Fitness in Pseudomonas putida KT2440 around PP_1412

Experiment: L-Phenylalanine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-Phenylalanine 5 mM (C)
1,609,975	+		PP_1411	0.80	+0.8
1,610,095	+		PP_1411	0.89	-0.3
1,610,167	+				+0.3
1,610,167	+				-0.2
1,610,168	-				+0.3
1,610,168	-				+0.2
1,610,168	-				-1.6
1,610,206	-				+0.8
1,610,256	+				+2.3
1,610,256	+				-0.5
1,610,256	+				+0.0
1,610,257	-				+0.1
1,610,257	-				+0.9
1,610,299	+				-1.4
1,610,299	+				+0.6
1,610,396	+				-0.1
1,610,397	-				+0.1
1,610,397	-				-0.5
1,610,484	-				+0.6
1,610,537	+		PP_5470	0.13	+0.8
1,610,537	+		PP_5470	0.13	-0.8
1,610,540	+		PP_5470	0.14	-2.6
1,610,540	+		PP_5470	0.14	-0.2
1,610,540	+		PP_5470	0.14	-0.4
1,610,541	-		PP_5470	0.14	+0.1
1,610,541	-				-0.7
1,610,541	-		PP_5470	0.14	-0.4
1,610,555	+		PP_5470	0.17	+0.2
1,610,559	-		PP_5470	0.18	-1.5
1,610,570	+		PP_5470	0.21	+0.3
1,610,571	-		PP_5470	0.21	+1.2
1,610,571	-		PP_5470	0.21	-0.3
1,610,571	-		PP_5470	0.21	-0.7
1,610,573	+		PP_5470	0.21	-0.9
1,610,574	-		PP_5470	0.22	+0.1
1,610,574	-		PP_5470	0.22	-0.0
1,610,588	+		PP_5470	0.25	+1.2
1,610,588	+		PP_5470	0.25	-1.0
1,610,589	-		PP_5470	0.25	-0.8
1,610,589	-		PP_5470	0.25	-0.2
1,610,589	-		PP_5470	0.25	+0.1
1,610,589	-		PP_5470	0.25	+1.5
1,610,589	-		PP_5470	0.25	-0.9
1,610,604	-		PP_5470	0.28	+0.4
1,610,622	-		PP_5470	0.32	-2.0
1,610,624	+		PP_5470	0.33	-0.6
1,610,624	+		PP_5470	0.33	+0.4
1,610,624	+		PP_5470	0.33	+0.1
1,610,624	+		PP_5470	0.33	+1.5
1,610,624	+		PP_5470	0.33	-1.4
1,610,624	+		PP_5470	0.33	+0.1
1,610,624	+		PP_5470	0.33	+1.3
1,610,624	+		PP_5470	0.33	-0.6
1,610,624	+		PP_5470	0.33	+1.1
1,610,624	+		PP_5470	0.33	+0.8
1,610,624	+		PP_5470	0.33	-0.5
1,610,624	+		PP_5470	0.33	-0.9
1,610,624	+		PP_5470	0.33	+0.3
1,610,625	-		PP_5470	0.33	-0.1
1,610,625	-		PP_5470	0.33	-0.1
1,610,625	-		PP_5470	0.33	-1.6
1,610,625	-		PP_5470	0.33	-0.9
1,610,625	-		PP_5470	0.33	-0.7
1,610,628	+		PP_5470	0.34	+0.2
1,610,628	+		PP_5470	0.34	-0.7
1,610,628	+		PP_5470	0.34	-0.9
1,610,629	-		PP_5470	0.34	+1.1
1,610,629	-		PP_5470	0.34	+0.2
1,610,629	-		PP_5470	0.34	+0.4
1,610,629	-		PP_5470	0.34	+0.5
1,610,629	-		PP_5470	0.34	+0.2
1,610,646	-		PP_5470	0.38	+1.3
1,610,646	-		PP_5470	0.38	+0.2
1,610,646	-		PP_5470	0.38	+1.9
1,610,646	-		PP_5470	0.38	+0.4
1,610,648	+		PP_5470	0.38	-0.8
1,610,648	+		PP_5470	0.38	-0.5
1,610,649	-		PP_5470	0.38	-0.4
1,610,649	-		PP_5470	0.38	-0.2
1,610,649	-		PP_5470	0.38	+0.1
1,610,651	+		PP_5470	0.39	+1.0
1,610,652	-		PP_5470	0.39	+0.8
1,610,652	-		PP_5470	0.39	-2.8
1,610,652	-		PP_5470	0.39	-0.0
1,610,670	-		PP_5470	0.43	+1.0
1,610,672	+		PP_5470	0.43	-0.4
1,610,756	+		PP_5470	0.62	-0.1
1,610,756	+		PP_5470	0.62	-0.5
1,610,756	+		PP_5470	0.62	+0.5
1,610,756	+		PP_5470	0.62	+0.3
1,610,756	+		PP_5470	0.62	+0.2
1,610,757	-		PP_5470	0.62	-1.2
1,610,757	-				+0.8
1,610,808	-		PP_5470	0.74	+0.0
1,611,155	+		PP_1412	0.17	+0.1
1,611,188	+		PP_1412	0.20	-0.5
1,611,340	+		PP_1412	0.33	+0.3
1,611,436	+		PP_1412	0.42	-2.5
1,611,437	-		PP_1412	0.42	-0.5
1,611,437	-		PP_1412	0.42	+0.8
1,611,437	-		PP_1412	0.42	-0.5
1,611,437	-		PP_1412	0.42	-0.7
1,611,632	+		PP_1412	0.60	+0.4
1,611,688	+		PP_1412	0.65	+1.0
1,611,688	+		PP_1412	0.65	-0.0
1,611,688	+		PP_1412	0.65	-0.5
1,611,688	+		PP_1412	0.65	+1.0
1,611,688	+		PP_1412	0.65	-2.6
1,611,688	+		PP_1412	0.65	-1.1
1,611,689	-		PP_1412	0.65	+0.1
1,611,689	-		PP_1412	0.65	+0.5
1,611,689	-		PP_1412	0.65	-1.2
1,612,082	+				-0.3
1,612,082	+				+0.3
1,612,082	+				+0.2
1,612,082	+				+0.2
1,612,107	+				-0.5
1,612,107	+				-0.1
1,612,107	+				-0.1
1,612,107	+				-0.7
1,612,108	-				-2.2
1,612,108	-				-0.5
1,612,108	-				-0.1
1,612,169	+				+0.2
1,612,170	-				-0.3
1,612,170	-				-0.5
1,612,170	-				+0.1
1,612,174	-				+0.5
1,612,191	+				-0.5
1,612,276	+		PP_1413	0.10	+1.3
1,612,276	+		PP_1413	0.10	+0.1
1,612,276	+		PP_1413	0.10	-1.5
1,612,276	+		PP_1413	0.10	+0.1
1,612,276	+		PP_1413	0.10	+0.0
1,612,276	+		PP_1413	0.10	-1.2
1,612,277	-		PP_1413	0.11	-0.0
1,612,334	-		PP_1413	0.19	+0.6
1,612,418	-		PP_1413	0.31	+0.4
1,612,495	-		PP_1413	0.42	-0.1
1,612,498	+		PP_1413	0.42	-0.5
1,612,498	+		PP_1413	0.42	-1.0
1,612,499	-		PP_1413	0.43	-0.7
1,612,499	-		PP_1413	0.43	+0.3
1,612,651	-		PP_1413	0.65	+0.0
1,612,706	+		PP_1413	0.72	-1.6
1,612,706	+		PP_1413	0.72	-0.9
1,612,749	+		PP_1413	0.79	+0.3
1,612,798	+		PP_1413	0.86	+1.2
1,612,799	-		PP_1413	0.86	+0.4
1,612,997	-				+0.6
1,612,997	-				+0.8