Strain Fitness in Pseudomonas putida KT2440 around PP_3588

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
4,075,789	-				-1.8
4,075,789	-				+0.3
4,075,825	+				+0.8
4,075,857	-				-1.4
4,075,865	-				-0.1
4,075,883	+				+0.4
4,075,883	+				+0.3
4,076,006	+		PP_3587	0.30	+0.3
4,076,007	-		PP_3587	0.30	+0.9
4,076,206	-		PP_3587	0.70	-0.8
4,076,206	-		PP_3587	0.70	+0.4
4,076,231	+		PP_3587	0.75	-0.3
4,076,231	+		PP_3587	0.75	+0.1
4,076,231	+		PP_3587	0.75	-0.7
4,076,266	+		PP_3587	0.82	+0.8
4,076,367	+				+0.1
4,076,395	+				+0.5
4,076,395	+				-0.0
4,076,396	-				+0.7
4,076,396	-				-0.3
4,076,419	+				+0.6
4,076,420	-				+0.3
4,076,489	-				-0.2
4,076,536	+				-0.2
4,076,536	+				+0.2
4,076,536	+				+1.2
4,076,537	-				+0.1
4,076,537	-				-0.9
4,076,537	-				-0.2
4,076,546	-				-0.7
4,076,546	-				+0.6
4,076,584	+				-0.4
4,076,584	+				-0.3
4,076,584	+				-0.6
4,076,585	-				+0.1
4,076,585	-				+0.2
4,076,585	-				-0.2
4,076,592	+				-0.2
4,076,593	-				-0.9
4,076,593	-				+0.1
4,076,593	-				-1.3
4,076,605	+				-0.0
4,076,606	-				+0.1
4,076,622	+				-1.4
4,076,623	-				+0.4
4,076,649	+				+2.2
4,076,650	-				+0.7
4,076,714	+				+0.0
4,076,715	-				+0.4
4,076,913	-		PP_3588	0.22	+0.5
4,076,953	+		PP_3588	0.25	-0.0
4,076,953	+		PP_3588	0.25	+0.4
4,077,036	-		PP_3588	0.32	+0.9
4,077,038	-		PP_3588	0.32	-1.6
4,077,046	-		PP_3588	0.33	-0.9
4,077,159	+		PP_3588	0.42	+0.2
4,077,198	-		PP_3588	0.46	-0.6
4,077,260	-		PP_3588	0.51	+0.0
4,077,286	+		PP_3588	0.53	+0.2
4,077,347	+		PP_3588	0.58	-0.9
4,077,348	-		PP_3588	0.58	+0.2
4,077,388	+		PP_3588	0.62	-0.0
4,077,389	-		PP_3588	0.62	+0.9
4,077,415	+		PP_3588	0.64	-0.1
4,077,416	-		PP_3588	0.64	-1.3
4,077,427	+		PP_3588	0.65	-0.4
4,077,427	+		PP_3588	0.65	+0.3
4,077,427	+		PP_3588	0.65	+0.1
4,077,427	+		PP_3588	0.65	-1.1
4,077,428	-		PP_3588	0.65	+1.3
4,077,428	-		PP_3588	0.65	-0.8
4,077,428	-		PP_3588	0.65	+0.3
4,077,428	-		PP_3588	0.65	-1.2
4,077,488	+		PP_3588	0.70	-0.9
4,077,489	-		PP_3588	0.70	-0.2
4,077,507	+		PP_3588	0.72	-0.9
4,077,507	+		PP_3588	0.72	+0.2
4,077,508	-		PP_3588	0.72	+0.3
4,077,508	-		PP_3588	0.72	+0.2
4,077,509	+		PP_3588	0.72	-0.5
4,077,509	+				-0.1
4,077,509	+		PP_3588	0.72	-1.2
4,077,509	+		PP_3588	0.72	+0.2
4,077,510	-		PP_3588	0.72	+0.7
4,077,510	-		PP_3588	0.72	+0.2
4,077,510	-		PP_3588	0.72	-0.2
4,077,513	+		PP_3588	0.72	-1.6
4,077,514	-		PP_3588	0.72	-2.1
4,077,557	+		PP_3588	0.76	-0.0
4,077,557	+		PP_3588	0.76	-0.2
4,077,557	+		PP_3588	0.76	+0.3
4,077,558	-		PP_3588	0.76	-2.0
4,077,576	-		PP_3588	0.77	+0.1
4,077,576	-		PP_3588	0.77	+0.1
4,077,922	+				+0.4
4,077,923	-				+0.1
4,077,923	-				+0.3
4,077,923	-				+1.1
4,077,923	-				-0.4
4,077,923	-				+0.2
4,077,999	-				+0.0
4,077,999	-				-1.0
4,078,031	+				-0.1
4,078,032	-				+0.9
4,078,233	-		PP_3589	0.25	-0.9
4,078,233	-		PP_3589	0.25	+0.3
4,078,641	-		PP_3589	0.57	-0.6
4,078,842	+		PP_3589	0.72	-0.7
4,078,842	+		PP_3589	0.72	-1.2
4,078,842	+		PP_3589	0.72	-1.7
4,078,842	+		PP_3589	0.72	+0.2