Strain Fitness in Pseudomonas putida KT2440 around PP_2405

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,748,198	+		PP_2403	0.58	+1.0
2,748,543	+				-0.1
2,748,544	-				-0.3
2,748,579	-				+0.4
2,748,588	+				-0.7
2,748,588	+				+0.2
2,748,608	-				-0.5
2,748,650	+				-0.5
2,748,651	-				-0.1
2,748,740	+				+0.8
2,748,927	+		PP_2404	0.73	+0.4
2,748,927	+		PP_2404	0.73	-0.7
2,748,928	-		PP_2404	0.73	+0.5
2,748,972	+		PP_2404	0.89	-0.3
2,748,972	+		PP_2404	0.89	+0.9
2,748,973	-		PP_2404	0.89	+1.2
2,748,973	-		PP_2404	0.89	-0.5
2,749,249	+		PP_2405	0.48	+0.8
2,749,250	-		PP_2405	0.48	-0.6
2,749,250	-		PP_2405	0.48	-0.2
2,749,301	-		PP_2405	0.58	-1.9
2,749,301	-		PP_2405	0.58	-2.0
2,749,334	+		PP_2405	0.64	+0.4
2,749,368	-		PP_2405	0.70	-0.2
2,749,371	+		PP_2405	0.71	-0.6
2,749,371	+		PP_2405	0.71	-0.3
2,749,371	+		PP_2405	0.71	-1.9
2,749,371	+		PP_2405	0.71	-1.3
2,749,371	+		PP_2405	0.71	-0.2
2,749,371	+		PP_2405	0.71	-0.0
2,749,372	-		PP_2405	0.71	+1.2
2,749,378	+		PP_2405	0.72	-1.1
2,749,378	+		PP_2405	0.72	+0.0
2,749,378	+		PP_2405	0.72	-0.2
2,749,379	-		PP_2405	0.72	-1.1
2,749,379	-				-0.4
2,749,379	-		PP_2405	0.72	-1.4
2,749,424	-		PP_2405	0.81	-1.9
2,749,424	-		PP_2405	0.81	+0.6
2,749,477	+				+0.4
2,749,477	+				+0.4
2,749,477	+				+0.7
2,749,478	-				+0.1
2,749,478	-				-0.0
2,749,500	-				+0.3
2,749,500	-				-0.1
2,749,581	+				+1.0
2,749,595	+				+0.2
2,749,595	+				-1.7
2,749,596	-				-0.3
2,749,596	-				+0.4
2,749,639	+				+0.1
2,749,807	+		PP_2406	0.20	+1.2
2,749,808	-		PP_2406	0.20	+0.3
2,749,808	-		PP_2406	0.20	-0.7
2,749,870	-		PP_2406	0.27	+0.0
2,750,037	+		PP_2406	0.47	-0.4
2,750,038	-		PP_2406	0.47	-0.2
2,750,278	+		PP_2406	0.75	-1.9
2,750,278	+		PP_2406	0.75	-0.2
2,750,282	+		PP_2406	0.76	-0.6
2,750,282	+		PP_2406	0.76	-0.2
2,750,283	-		PP_2406	0.76	-0.6
2,750,433	-				-1.9