Strain Fitness in Pseudomonas putida KT2440 around PP_2098

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,393,044	+		PP_2097	0.65	+0.9
2,393,045	-		PP_2097	0.65	-0.4
2,393,045	-		PP_2097	0.65	-0.8
2,393,050	+		PP_2097	0.66	+0.8
2,393,051	-		PP_2097	0.66	-0.1
2,393,104	+		PP_2097	0.68	+0.0
2,393,104	+		PP_2097	0.68	-0.8
2,393,105	-		PP_2097	0.68	+0.1
2,393,105	-		PP_2097	0.68	-0.0
2,393,113	+		PP_2097	0.68	+0.4
2,393,113	+		PP_2097	0.68	-0.2
2,393,114	-		PP_2097	0.68	-0.2
2,393,114	-		PP_2097	0.68	-0.8
2,393,166	+		PP_2097	0.70	-0.7
2,393,166	+		PP_2097	0.70	+0.1
2,393,166	+		PP_2097	0.70	-0.5
2,393,167	-		PP_2097	0.71	-0.6
2,393,167	-		PP_2097	0.71	-0.8
2,393,245	+		PP_2097	0.74	+0.0
2,393,339	-		PP_2097	0.78	+0.7
2,393,339	-		PP_2097	0.78	+0.5
2,393,339	-		PP_2097	0.78	+0.8
2,393,422	-		PP_2097	0.81	-0.0
2,393,431	+		PP_2097	0.82	-0.4
2,393,432	-		PP_2097	0.82	+0.1
2,393,571	+		PP_2097	0.87	+0.3
2,393,572	-		PP_2097	0.87	-1.0
2,393,699	+				-1.0
2,393,699	+				-0.0
2,393,822	+				+1.0
2,393,822	+				+0.9
2,393,822	+				+0.2
2,393,823	-				+0.8
2,393,823	-				-1.3
2,393,824	+				-0.5
2,393,825	-				+0.3
2,393,825	-				+0.0
2,393,873	-				-0.4
2,393,994	+				-2.1
2,394,020	+				-0.8
2,394,103	-				-2.0
2,394,103	-				+0.9
2,394,111	+				-0.7
2,394,263	+				-1.2
2,394,497	+		PP_2098	0.37	-1.5
2,394,497	+		PP_2098	0.37	-0.9
2,394,498	-		PP_2098	0.37	-1.0
2,394,498	-		PP_2098	0.37	-2.1
2,394,647	+		PP_2098	0.47	-0.8
2,394,648	-		PP_2098	0.47	-1.1
2,394,648	-		PP_2098	0.47	-1.2
2,394,674	+		PP_2098	0.49	-1.1
2,394,674	+		PP_2098	0.49	-0.8
2,394,701	-		PP_2098	0.51	-1.3
2,394,701	-		PP_2098	0.51	-1.3
2,394,718	+		PP_2098	0.52	-1.2
2,394,719	-		PP_2098	0.52	-1.9
2,394,719	-		PP_2098	0.52	-2.0
2,394,778	-		PP_2098	0.56	-1.5
2,395,092	+		PP_2098	0.79	-0.8
2,395,092	+		PP_2098	0.79	-0.4
2,395,093	-		PP_2098	0.79	-1.2
2,395,093	-		PP_2098	0.79	-0.7
2,395,097	+		PP_2098	0.79	+0.3
2,395,111	-		PP_2098	0.80	-1.9
2,395,142	+		PP_2098	0.82	-1.2
2,395,143	-		PP_2098	0.82	-0.9
2,395,143	-		PP_2098	0.82	-1.1
2,395,193	+		PP_2098	0.86	-1.6
2,395,194	-		PP_2098	0.86	-1.2
2,395,194	-		PP_2098	0.86	-0.8
2,395,408	+				-1.4
2,395,408	+				+0.8
2,395,409	-				-0.1
2,395,409	-				-0.2
2,395,479	+				-0.1
2,395,503	-				+1.1
2,395,516	+				-1.8
2,395,516	+				-0.7
2,395,516	+				-1.9
2,395,570	-				-0.4
2,395,633	+				-0.5
2,395,633	+				-0.7
2,395,633	+				-0.2
2,395,633	+				+0.3
2,395,633	+				-0.8
2,395,633	+				+0.4
2,395,634	-				-0.2
2,395,634	-				-0.1
2,395,634	-				-0.1
2,395,634	-				-0.0
2,395,634	-				+0.1
2,395,652	+				-1.2
2,395,807	-		PP_2099	0.50	-0.0
2,395,807	-		PP_2099	0.50	+1.4
2,395,810	+		PP_2099	0.51	+0.6
2,395,810	+		PP_2099	0.51	-1.0
2,395,810	+		PP_2099	0.51	+0.6
2,395,810	+		PP_2099	0.51	-0.6
2,395,810	+		PP_2099	0.51	+0.9
2,395,810	+		PP_2099	0.51	-0.7
2,395,810	+		PP_2099	0.51	-0.1
2,395,811	-		PP_2099	0.51	-0.4
2,395,811	-		PP_2099	0.51	-0.3
2,395,811	-		PP_2099	0.51	-0.3
2,395,868	+		PP_2099	0.68	-0.3
2,395,994	-				-0.8
2,395,994	-				-0.7
2,395,997	+				+0.7
2,396,000	+				-0.6
2,396,000	+				-0.7
2,396,015	+				-1.4
2,396,016	-				-1.0
2,396,022	+				-0.3
2,396,022	+				+0.7
2,396,023	-				-0.5
2,396,023	-				-0.4
2,396,023	-				+0.4
2,396,023	-				-0.8
2,396,098	+				-0.3
2,396,098	+				-0.6
2,396,377	-				-0.2