Strain Fitness in Pseudomonas putida KT2440 around PP_2088

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,378,707	-				-0.6
2,378,721	-				-0.5
2,378,721	-				+2.2
2,379,204	-		PP_2087	0.59	-0.1
2,379,204	-		PP_2087	0.59	+0.3
2,379,204	-		PP_2087	0.59	-0.4
2,379,207	-		PP_2087	0.59	+1.2
2,379,381	+		PP_2087	0.80	+0.3
2,379,382	-		PP_2087	0.80	-0.8
2,379,397	-		PP_2087	0.82	+0.2
2,379,561	+				+0.4
2,379,561	+				-0.2
2,379,566	+				+0.5
2,379,666	-				+1.2
2,379,740	+		PP_2088	0.18	-1.3
2,379,854	+		PP_2088	0.37	-1.5
2,379,854	+		PP_2088	0.37	-2.2
2,379,902	+		PP_2088	0.45	-1.8
2,379,914	+		PP_2088	0.47	-1.0
2,379,914	+		PP_2088	0.47	-0.6
2,380,169	+				+0.5
2,380,223	+				+0.4
2,380,224	-				+1.2
2,380,264	+				-1.1
2,380,309	+				+2.2
2,380,309	+				-0.3
2,380,309	+				+3.2
2,380,309	+				-1.7
2,380,309	+				+0.6
2,380,313	+				+1.2
2,380,313	+				+1.2
2,380,313	+				+0.6
2,380,514	+		PP_2089	0.17	+3.2
2,380,985	-		PP_2089	0.63	+0.6
2,381,123	+		PP_2089	0.76	+2.2