Strain Fitness in Pseudomonas putida KT2440 around PP_1502

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
1,706,381	+		PP_1500	0.48	-0.2
1,706,381	+		PP_1500	0.48	+1.1
1,706,382	-		PP_1500	0.48	-0.0
1,706,422	+		PP_1500	0.53	-1.2
1,706,423	-		PP_1500	0.53	-0.3
1,706,491	+		PP_1500	0.60	-0.9
1,706,680	+		PP_1500	0.81	+0.7
1,706,680	+		PP_1500	0.81	-0.7
1,706,680	+		PP_1500	0.81	-1.2
1,706,681	-		PP_1500	0.81	-0.1
1,706,751	+		PP_1500	0.88	-1.7
1,706,751	+		PP_1500	0.88	-0.2
1,706,751	+		PP_1500	0.88	+0.3
1,706,751	+		PP_1500	0.88	-0.2
1,706,752	-		PP_1500	0.88	+0.7
1,706,934	+		PP_1501	0.24	-0.0
1,706,935	-		PP_1501	0.24	+0.8
1,706,937	+		PP_1501	0.25	-0.4
1,706,937	+		PP_1501	0.25	-1.1
1,706,937	+		PP_1501	0.25	+0.1
1,706,938	-		PP_1501	0.25	+0.6
1,707,022	-		PP_1501	0.51	-0.8
1,707,022	-		PP_1501	0.51	-0.6
1,707,022	-		PP_1501	0.51	+0.2
1,707,022	-		PP_1501	0.51	-2.4
1,707,028	+		PP_1501	0.53	+0.0
1,707,547	+		PP_1502	0.28	-1.2
1,707,547	+		PP_1502	0.28	+0.6
1,707,548	-		PP_1502	0.28	-0.5
1,707,548	-		PP_1502	0.28	-3.0
1,707,574	+		PP_1502	0.32	-2.7
1,707,574	+		PP_1502	0.32	+0.8
1,707,574	+		PP_1502	0.32	-0.6
1,707,574	+		PP_1502	0.32	-0.7
1,707,656	+		PP_1502	0.42	-1.5
1,707,828	-		PP_1502	0.64	+0.2
1,707,828	-		PP_1502	0.64	-1.1
1,707,878	-				+0.2
1,707,920	-		PP_1502	0.75	-0.9
1,707,920	-		PP_1502	0.75	-0.3
1,708,102	-				-0.9
1,708,115	+				+1.2
1,708,115	+				+0.2
1,708,115	+				-0.3
1,708,116	-				+1.3
1,708,116	-				+0.2
1,708,116	-				+0.2
1,708,116	-				-0.3
1,708,196	+				-1.0
1,708,197	-				-1.1
1,708,443	+		PP_1503	0.59	+1.0
1,708,444	-		PP_1503	0.59	-0.1
1,708,444	-		PP_1503	0.59	+0.6
1,708,489	+		PP_1503	0.69	-1.3
1,708,490	-		PP_1503	0.69	-0.8
1,708,550	-		PP_1503	0.82	+0.3
1,708,610	-				-0.4
1,708,636	+				+0.6
1,708,726	+				+0.9
1,708,727	-				+0.2
1,708,758	+				+0.0
1,708,758	+				-0.0
1,708,759	-				+0.5
1,708,759	-				-0.3
1,708,931	-		PP_1504	0.20	+1.0
1,708,948	-		PP_1504	0.24	+0.3
1,708,994	+		PP_1504	0.37	-1.2
1,708,994	+		PP_1504	0.37	-0.6
1,708,994	+		PP_1504	0.37	+0.2
1,708,994	+		PP_1504	0.37	-1.0
1,708,994	+		PP_1504	0.37	-0.4
1,708,994	+		PP_1504	0.37	+0.4
1,708,994	+		PP_1504	0.37	+0.1
1,708,995	-				+0.6
1,708,995	-		PP_1504	0.37	-0.1
1,708,995	-		PP_1504	0.37	+0.6
1,708,995	-		PP_1504	0.37	+0.4
1,708,998	+		PP_1504	0.38	+0.6
1,708,998	+		PP_1504	0.38	+0.7
1,708,998	+		PP_1504	0.38	-0.2
1,708,998	+		PP_1504	0.38	-1.0
1,708,998	+		PP_1504	0.38	-0.1
1,708,998	+		PP_1504	0.38	+0.6
1,708,998	+		PP_1504	0.38	+0.5
1,709,076	+		PP_1504	0.58	-0.4
1,709,077	-		PP_1504	0.58	-0.4