Strain Fitness in Pseudomonas putida KT2440 around PP_1416

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
1,615,443	+		PP_1415	0.71	-0.7
1,615,443	+		PP_1415	0.71	-0.1
1,615,443	+				+0.6
1,615,443	+		PP_1415	0.71	-0.9
1,615,444	-		PP_1415	0.71	-0.8
1,615,817	-				-1.3
1,615,822	+				-2.0
1,615,982	+		PP_1416	0.16	-0.9
1,615,983	-		PP_1416	0.16	-0.3
1,616,025	+		PP_1416	0.19	-1.7
1,616,026	-		PP_1416	0.19	-1.9
1,616,143	+		PP_1416	0.26	-0.9
1,616,144	-		PP_1416	0.26	-2.6
1,616,144	-		PP_1416	0.26	-1.2
1,616,144	-		PP_1416	0.26	+0.1
1,616,193	+				+3.2
1,616,193	+		PP_1416	0.30	-0.5
1,616,193	+		PP_1416	0.30	-0.8
1,616,193	+		PP_1416	0.30	-1.6
1,616,194	-		PP_1416	0.30	-1.8
1,616,238	-		PP_1416	0.33	-0.5
1,616,417	+		PP_1416	0.44	-1.9
1,616,417	+		PP_1416	0.44	-0.9
1,616,418	-		PP_1416	0.44	+0.7
1,616,538	+		PP_1416	0.52	-1.2
1,616,538	+		PP_1416	0.52	-2.0
1,616,813	+		PP_1416	0.71	-1.2
1,616,814	-		PP_1416	0.71	-2.8
1,616,814	-		PP_1416	0.71	-1.8
1,617,207	-				-1.4
1,617,242	+				-1.8
1,617,243	-				-2.9
1,617,243	-				+0.6
1,617,252	+				-3.7
1,617,561	+		PP_1417	0.62	-1.9
1,617,561	+		PP_1417	0.62	-1.3
1,617,561	+		PP_1417	0.62	-0.7
1,617,561	+		PP_1417	0.62	-0.4
1,617,562	-		PP_1417	0.62	-0.8
1,617,627	+		PP_1417	0.76	-2.8
1,617,628	-		PP_1417	0.76	-1.8
1,617,646	-		PP_1417	0.79	-0.0
1,617,646	-		PP_1417	0.79	-2.3
1,617,646	-		PP_1417	0.79	-0.3
1,617,804	+				-0.2
1,617,825	+				-0.1
1,617,826	-				-0.1
1,617,826	-				+0.1
1,617,826	-				+1.2
1,617,838	-				+2.2
1,617,919	+				-1.8
1,617,920	-				+1.2
1,617,955	+				-2.7
1,617,956	-				-1.6
1,617,956	-				+2.2
1,617,979	+				-2.1
1,617,979	+				-2.7
1,617,980	-				-2.9
1,617,980	-				-1.4
1,618,093	+		PP_1418	0.18	-2.3
1,618,093	+		PP_1418	0.18	+1.2
1,618,093	+		PP_1418	0.18	-1.3
1,618,123	+		PP_1418	0.21	-0.4
1,618,124	-		PP_1418	0.21	-2.3