Strain Fitness in Pseudomonas putida KT2440 around PP_0540

Experiment: L-tyrosine 5 mM (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_0538 and PP_0539 are separated by 92 nucleotidesPP_0539 and PP_0540 are separated by 20 nucleotidesPP_0540 and PP_0541 are separated by 217 nucleotidesPP_0541 and PP_0542 are separated by 107 nucleotides PP_0538: PP_0538 - inorganic pyrophosphatase, at 625,089 to 625,616 _0538 PP_0539: PP_0539 - glucose-regulated peptidase, at 625,709 to 626,524 _0539 PP_0540: PP_0540 - conserved inner membrane protein, at 626,545 to 627,192 _0540 PP_0541: PP_0541 - Acetyltransferase, GNAT family, at 627,410 to 627,868 _0541 PP_0542: PP_0542 - ethanolamine ammonia-lyase, beta-subunit, at 627,976 to 628,794 _0542 Position (kb) 626 627 628Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 625.658 kb on - strandat 625.658 kb on - strandat 625.660 kb on - strandat 625.660 kb on - strandat 625.783 kb on - strandat 625.783 kb on - strandat 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.803 kb on + strand, within PP_0539at 625.804 kb on - strand, within PP_0539at 625.816 kb on - strand, within PP_0539at 625.844 kb on - strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.896 kb on + strand, within PP_0539at 625.897 kb on - strand, within PP_0539at 625.956 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.079 kb on + strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.080 kb on - strand, within PP_0539at 626.288 kb on + strand, within PP_0539at 626.491 kb on + strandat 626.492 kb on - strandat 626.492 kb on - strandat 626.539 kb on - strandat 626.843 kb on + strand, within PP_0540at 626.843 kb on + strand, within PP_0540at 626.856 kb on + strand, within PP_0540at 626.868 kb on - strand, within PP_0540at 626.936 kb on + strand, within PP_0540at 626.936 kb on + strand, within PP_0540at 627.067 kb on + strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.068 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.111 kb on - strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.125 kb on + strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.126 kb on - strand, within PP_0540at 627.149 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.194 kb on + strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.195 kb on - strandat 627.218 kb on - strandat 627.218 kb on - strandat 627.271 kb on - strandat 627.272 kb on + strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.273 kb on - strandat 627.278 kb on + strandat 627.307 kb on - strandat 627.317 kb on + strandat 627.318 kb on - strandat 627.322 kb on + strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.323 kb on - strandat 627.331 kb on - strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.380 kb on + strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.381 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strandat 627.436 kb on - strandat 627.609 kb on - strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.612 kb on + strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.613 kb on - strand, within PP_0541at 627.616 kb on + strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.617 kb on - strand, within PP_0541at 627.657 kb on + strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.658 kb on - strand, within PP_0541at 627.720 kb on + strand, within PP_0541at 627.720 kb on + strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.721 kb on - strand, within PP_0541at 627.780 kb on + strand, within PP_0541at 627.807 kb on + strand, within PP_0541at 627.807 kb on + strand, within PP_0541at 627.943 kb on + strandat 627.944 kb on - strandat 628.035 kb on + strandat 628.057 kb on + strandat 628.058 kb on - strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.103 kb on + strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.104 kb on - strand, within PP_0542at 628.130 kb on + strand, within PP_0542

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine 5 mM (C)
remove
625,658 - +1.1
625,658 - -1.7
625,660 - -0.2
625,660 - +0.2
625,783 - -0.4
625,783 - -0.1
625,803 + PP_0539 0.12 -1.1
625,803 + PP_0539 0.12 -0.4
625,803 + PP_0539 0.12 -0.6
625,804 - PP_0539 0.12 -0.0
625,816 - PP_0539 0.13 +0.6
625,844 - PP_0539 0.17 -0.5
625,896 + PP_0539 0.23 -0.5
625,896 + PP_0539 0.23 +0.5
625,896 + PP_0539 0.23 -1.4
625,896 + PP_0539 0.23 +0.2
625,897 - PP_0539 0.23 -1.2
625,956 + PP_0539 0.30 -1.4
626,079 + PP_0539 0.45 +0.1
626,079 + PP_0539 0.45 -0.5
626,079 + PP_0539 0.45 -0.4
626,079 + PP_0539 0.45 -1.0
626,079 + PP_0539 0.45 -0.9
626,079 + PP_0539 0.45 +0.4
626,079 + PP_0539 0.45 +0.7
626,080 - PP_0539 0.45 +0.8
626,080 - PP_0539 0.45 +0.4
626,080 - PP_0539 0.45 -0.5
626,080 - PP_0539 0.45 -0.9
626,080 - PP_0539 0.45 +1.0
626,080 - PP_0539 0.45 +0.6
626,288 + PP_0539 0.71 -0.3
626,491 + -1.0
626,492 - -0.2
626,492 - -1.0
626,539 - +0.5
626,843 + PP_0540 0.46 -2.8
626,843 + PP_0540 0.46 -3.1
626,856 + PP_0540 0.48 -1.9
626,868 - PP_0540 0.50 -0.5
626,936 + PP_0540 0.60 -3.9
626,936 + PP_0540 0.60 -1.6
627,067 + PP_0540 0.81 -3.2
627,068 - PP_0540 0.81 -2.4
627,068 - PP_0540 0.81 -1.1
627,111 - PP_0540 0.87 -1.1
627,111 - PP_0540 0.87 -0.8
627,125 + PP_0540 0.90 -3.4
627,125 + PP_0540 0.90 -1.6
627,126 - PP_0540 0.90 -1.3
627,126 - PP_0540 0.90 -3.0
627,126 - PP_0540 0.90 -1.4
627,126 - PP_0540 0.90 -3.3
627,126 - PP_0540 0.90 -1.2
627,126 - PP_0540 0.90 -2.8
627,126 - PP_0540 0.90 -2.1
627,149 + -0.5
627,194 + -2.2
627,194 + -2.0
627,194 + +0.1
627,194 + -1.8
627,195 - +0.1
627,195 - -1.6
627,195 - -0.1
627,195 - -1.1
627,195 - +0.5
627,218 - -0.9
627,218 - -1.1
627,271 - -0.6
627,272 + +0.3
627,273 - -0.5
627,273 - -0.6
627,273 - +0.7
627,273 - -0.1
627,273 - -0.0
627,273 - +0.6
627,278 + -0.5
627,307 - -0.3
627,317 + +1.5
627,318 - +0.3
627,322 + -0.4
627,323 - +0.1
627,323 - -0.3
627,323 - -0.1
627,331 - -0.2
627,380 + -0.3
627,380 + -0.6
627,380 + -0.9
627,381 - -0.3
627,381 - +0.1
627,381 - -0.5
627,381 - +0.5
627,436 - +0.1
627,436 - -0.2
627,436 - +0.7
627,609 - PP_0541 0.43 -1.6
627,612 + PP_0541 0.44 +0.5
627,612 + PP_0541 0.44 -0.4
627,612 + PP_0541 0.44 +0.1
627,612 + PP_0541 0.44 -0.4
627,612 + PP_0541 0.44 +0.5
627,612 + PP_0541 0.44 +0.1
627,612 + PP_0541 0.44 -0.9
627,612 + PP_0541 0.44 -0.4
627,612 + PP_0541 0.44 -0.2
627,613 - PP_0541 0.44 -0.9
627,613 - PP_0541 0.44 -0.1
627,613 - PP_0541 0.44 +0.5
627,613 - PP_0541 0.44 -0.4
627,613 - PP_0541 0.44 -0.2
627,613 - PP_0541 0.44 +0.4
627,613 - PP_0541 0.44 +1.1
627,613 - PP_0541 0.44 +0.4
627,613 - PP_0541 0.44 +0.7
627,616 + PP_0541 0.45 +1.0
627,617 - PP_0541 0.45 +0.9
627,617 - PP_0541 0.45 +0.7
627,617 - PP_0541 0.45 -0.8
627,657 + PP_0541 0.54 -0.1
627,658 - PP_0541 0.54 -0.4
627,658 - PP_0541 0.54 +0.3
627,658 - PP_0541 0.54 +1.0
627,720 + PP_0541 0.68 +0.3
627,720 + PP_0541 0.68 -0.0
627,721 - PP_0541 0.68 +0.9
627,721 - PP_0541 0.68 +0.1
627,721 - PP_0541 0.68 -2.1
627,780 + PP_0541 0.81 +0.0
627,807 + PP_0541 0.86 -0.9
627,807 + PP_0541 0.86 -0.2
627,943 + -1.4
627,944 - -0.2
628,035 + +0.8
628,057 + +0.5
628,058 - PP_0542 0.10 +0.0
628,103 + PP_0542 0.16 +0.1
628,103 + PP_0542 0.16 -2.1
628,104 - PP_0542 0.16 +0.1
628,104 - PP_0542 0.16 -2.3
628,130 + PP_0542 0.19 -0.1

Or see this region's nucleotide sequence