Strain Fitness in Pseudomonas putida KT2440 around PP_5374

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
6,124,450	+		PP_5373	0.70	+0.4
6,124,451	-		PP_5373	0.70	-0.3
6,124,451	-		PP_5373	0.70	+0.2
6,124,466	-		PP_5373	0.71	-0.2
6,124,615	+		PP_5373	0.84	+0.3
6,124,615	+		PP_5373	0.84	+0.3
6,124,615	+		PP_5373	0.84	-1.3
6,124,616	-		PP_5373	0.84	-0.5
6,124,648	-		PP_5373	0.86	+0.1
6,124,648	-		PP_5373	0.86	+0.7
6,124,649	+		PP_5373	0.87	-0.8
6,124,649	+		PP_5373	0.87	-0.2
6,124,649	+		PP_5373	0.87	-0.3
6,124,649	+		PP_5373	0.87	-0.2
6,124,650	-		PP_5373	0.87	+0.4
6,124,650	-		PP_5373	0.87	-1.0
6,124,661	+		PP_5373	0.88	-0.4
6,124,662	-		PP_5373	0.88	-0.4
6,124,662	-		PP_5373	0.88	+0.6
6,124,697	-				-1.2
6,124,745	+				-0.2
6,124,781	+				+0.6
6,124,800	+				+0.2
6,124,825	+				+1.2
6,124,825	+				+0.2
6,124,899	-				+0.2
6,124,899	-				+0.0
6,124,909	+				-0.2
6,124,910	-				-0.4
6,124,953	+				-1.2
6,124,954	-				-0.3
6,124,954	-				+1.1
6,124,959	+				-0.1
6,124,960	-				+0.1
6,124,963	+				-0.9
6,124,964	-				-0.9
6,125,030	+				+0.7
6,125,055	+				+0.2
6,125,056	-				-0.8
6,125,090	-				+1.2
6,125,090	-				+0.8
6,125,090	-				+1.1
6,125,090	-				+0.7
6,125,194	-				-1.8
6,125,273	+				-0.8
6,125,273	+				+0.2
6,125,274	-				-0.8
6,125,274	-				+0.3
6,125,274	-				+0.4
6,125,277	-				-0.5
6,125,410	+		PP_5374	0.12	-0.4
6,125,410	+		PP_5374	0.12	-0.1
6,125,411	-		PP_5374	0.12	-0.5
6,125,411	-		PP_5374	0.12	-0.0
6,125,411	-		PP_5374	0.12	+0.3
6,125,436	+		PP_5374	0.13	-0.2
6,125,436	+		PP_5374	0.13	-0.1
6,125,436	+		PP_5374	0.13	-0.3
6,125,437	-		PP_5374	0.14	-0.3
6,125,437	-				+1.2
6,125,560	+		PP_5374	0.21	-0.5
6,125,560	+		PP_5374	0.21	+0.2
6,125,561	-		PP_5374	0.21	+0.4
6,125,613	+		PP_5374	0.24	-0.4
6,125,613	+		PP_5374	0.24	+0.1
6,125,614	-		PP_5374	0.24	-0.3
6,125,622	+		PP_5374	0.24	-0.2
6,125,623	-		PP_5374	0.24	-1.0
6,125,623	-		PP_5374	0.24	+0.0
6,125,627	+		PP_5374	0.25	-1.2
6,125,628	-		PP_5374	0.25	-0.0
6,125,655	+		PP_5374	0.26	+1.1
6,125,655	+		PP_5374	0.26	+0.2
6,125,686	+		PP_5374	0.28	-0.7
6,125,687	-		PP_5374	0.28	+0.8
6,125,758	+		PP_5374	0.32	-0.1
6,125,758	+		PP_5374	0.32	-0.2
6,125,758	+		PP_5374	0.32	+0.2
6,125,758	+		PP_5374	0.32	+0.1
6,125,758	+				+0.6
6,125,758	+		PP_5374	0.32	+0.7
6,125,759	-		PP_5374	0.32	-0.7
6,125,759	-		PP_5374	0.32	+1.3
6,125,759	-		PP_5374	0.32	+0.2
6,125,922	+		PP_5374	0.42	+0.0
6,125,931	+		PP_5374	0.43	+0.5
6,125,932	-		PP_5374	0.43	+1.3
6,125,932	-		PP_5374	0.43	+0.8
6,125,935	-		PP_5374	0.43	+0.0
6,125,935	-		PP_5374	0.43	-1.0
6,125,991	+		PP_5374	0.46	+0.6
6,125,991	+		PP_5374	0.46	+0.7
6,125,991	+		PP_5374	0.46	+0.8
6,125,991	+		PP_5374	0.46	+1.3
6,125,991	+		PP_5374	0.46	+1.7
6,125,992	-		PP_5374	0.46	-2.2
6,125,992	-		PP_5374	0.46	-0.7
6,125,992	-		PP_5374	0.46	-0.4
6,125,992	-		PP_5374	0.46	+0.3
6,125,992	-		PP_5374	0.46	-0.0
6,126,046	+		PP_5374	0.49	+1.0
6,126,046	+		PP_5374	0.49	+0.3
6,126,046	+		PP_5374	0.49	+1.2
6,126,082	+		PP_5374	0.51	+0.1
6,126,082	+		PP_5374	0.51	-0.4
6,126,083	-		PP_5374	0.51	+1.0
6,126,083	-		PP_5374	0.51	+0.0
6,126,095	+		PP_5374	0.52	+0.4
6,126,095	+		PP_5374	0.52	-0.1
6,126,096	-		PP_5374	0.52	+1.1
6,126,096	-				+2.7
6,126,096	-		PP_5374	0.52	-0.3
6,126,163	+		PP_5374	0.56	+0.2
6,126,163	+		PP_5374	0.56	+1.0
6,126,164	-		PP_5374	0.56	+0.6
6,126,164	-		PP_5374	0.56	+0.2
6,126,394	+		PP_5374	0.70	-2.4
6,126,394	+		PP_5374	0.70	+1.2
6,126,394	+		PP_5374	0.70	+0.0
6,126,394	+		PP_5374	0.70	-2.4
6,126,395	-		PP_5374	0.70	-1.3
6,126,395	-		PP_5374	0.70	-0.8
6,126,395	-		PP_5374	0.70	-0.3
6,126,411	-		PP_5374	0.71	+0.7
6,126,411	-		PP_5374	0.71	+0.5
6,126,411	-		PP_5374	0.71	-0.2
6,126,411	-		PP_5374	0.71	+0.4
6,126,510	+		PP_5374	0.77	-0.4
6,126,510	+		PP_5374	0.77	+1.7
6,126,510	+		PP_5374	0.77	+0.7
6,126,526	+		PP_5374	0.77	+0.7
6,126,526	+		PP_5374	0.77	-0.4
6,126,526	+		PP_5374	0.77	+0.3
6,126,527	-		PP_5374	0.78	-0.2
6,126,527	-		PP_5374	0.78	+1.2
6,126,527	-		PP_5374	0.78	+0.6
6,126,567	+		PP_5374	0.80	+0.3
6,126,568	-		PP_5374	0.80	+0.6
6,126,568	-		PP_5374	0.80	-0.5
6,126,568	-		PP_5374	0.80	+0.6
6,126,639	+		PP_5374	0.84	-0.8
6,126,639	+		PP_5374	0.84	-1.4
6,126,639	+		PP_5374	0.84	+0.1
6,126,639	+		PP_5374	0.84	+0.6
6,126,639	+		PP_5374	0.84	-0.1
6,126,639	+		PP_5374	0.84	+0.1
6,126,639	+		PP_5374	0.84	-0.6
6,126,640	-		PP_5374	0.84	+0.3
6,126,640	-		PP_5374	0.84	+0.8
6,126,640	-		PP_5374	0.84	+0.6
6,126,640	-		PP_5374	0.84	-0.2
6,126,640	-		PP_5374	0.84	+1.9
6,126,640	-		PP_5374	0.84	-0.1
6,126,640	-		PP_5374	0.84	-0.0
6,126,640	-		PP_5374	0.84	+0.5
6,126,642	-		PP_5374	0.84	+0.2
6,126,642	-		PP_5374	0.84	+1.7
6,126,642	-		PP_5374	0.84	-0.4
6,126,736	-		PP_5374	0.90	-0.2
6,126,736	-		PP_5374	0.90	-1.2
6,126,739	+				+0.2
6,126,739	+				-0.4
6,126,739	+				-0.7
6,126,739	+				+0.9
6,126,740	-				+0.6
6,126,740	-				-0.7
6,126,740	-				+1.1
6,126,790	-				+0.8
6,126,790	-				+0.1
6,126,813	+				-1.1
6,126,813	+				-2.0
6,126,813	+				+0.4
6,126,814	-				-0.2
6,126,814	-				+0.9
6,126,814	-				-0.5
6,126,814	-				+1.1
6,126,814	-				-0.4
6,126,814	-				-1.4
6,126,814	-				+0.2
6,126,814	-				-0.1
6,126,815	+				+0.3
6,126,879	+				-0.7
6,126,880	-				+1.2
6,126,880	-				-0.7
6,126,880	-				-1.0
6,126,908	-				+0.7
6,126,913	-				-0.7
6,126,913	-				-0.2
6,126,978	-				-0.9
6,127,090	+		PP_5375	0.13	+0.5
6,127,090	+		PP_5375	0.13	-0.3
6,127,091	-		PP_5375	0.13	-1.8
6,127,091	-		PP_5375	0.13	-0.5
6,127,091	-		PP_5375	0.13	-0.5
6,127,197	+		PP_5375	0.24	-1.3
6,127,198	-		PP_5375	0.24	-0.2
6,127,202	+		PP_5375	0.25	+0.7
6,127,202	+		PP_5375	0.25	+0.5
6,127,202	+		PP_5375	0.25	+0.3
6,127,203	-		PP_5375	0.25	-0.1
6,127,276	+		PP_5375	0.33	-0.4
6,127,276	+				+0.2
6,127,277	-		PP_5375	0.33	+0.2
6,127,314	+		PP_5375	0.37	-0.6
6,127,314	+		PP_5375	0.37	+0.4
6,127,314	+		PP_5375	0.37	-0.5
6,127,315	-		PP_5375	0.37	-0.5
6,127,315	-		PP_5375	0.37	-0.6
6,127,446	-		PP_5375	0.52	-0.7
6,127,446	-		PP_5375	0.52	-0.3
6,127,446	-		PP_5375	0.52	-0.4
6,127,446	-		PP_5375	0.52	-0.7
6,127,475	+		PP_5375	0.55	+0.4
6,127,621	+		PP_5375	0.71	+0.8
6,127,621	+		PP_5375	0.71	+0.5
6,127,621	+		PP_5375	0.71	-0.0
6,127,621	+		PP_5375	0.71	-1.5
6,127,621	+		PP_5375	0.71	-0.8
6,127,621	+		PP_5375	0.71	+0.7
6,127,622	-		PP_5375	0.71	-0.3
6,127,622	-		PP_5375	0.71	-1.5
6,127,622	-		PP_5375	0.71	+0.8
6,127,674	-		PP_5375	0.77	-0.4
6,127,674	-		PP_5375	0.77	-0.1
6,127,677	-		PP_5375	0.77	-1.8
6,127,707	+		PP_5375	0.80	+0.4
6,127,717	-		PP_5375	0.82	-0.7
6,127,727	-		PP_5375	0.83	+0.7
6,127,742	+		PP_5375	0.84	+0.1
6,127,742	+		PP_5375	0.84	+0.0
6,127,770	+		PP_5375	0.87	-0.1
6,127,770	+		PP_5375	0.87	+0.4
6,127,770	+		PP_5375	0.87	-0.1
6,127,907	+				+0.9