Strain Fitness in Pseudomonas putida KT2440 around PP_5313

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
6,060,146	+		PP_5311	0.84	-1.2
6,060,158	+		PP_5311	0.85	+0.5
6,060,214	+		PP_5311	0.89	-1.2
6,060,214	+		PP_5311	0.89	-1.9
6,060,215	-		PP_5311	0.89	-1.7
6,060,216	+		PP_5311	0.89	+0.9
6,060,216	+		PP_5311	0.89	-2.7
6,060,216	+		PP_5311	0.89	+0.5
6,060,217	-		PP_5311	0.89	+0.4
6,060,217	-		PP_5311	0.89	+0.1
6,060,217	-		PP_5311	0.89	+0.7
6,060,217	-		PP_5311	0.89	+0.7
6,060,240	+				-2.2
6,060,241	-				-0.2
6,060,362	+				-0.4
6,060,362	+				-1.4
6,060,363	-				+0.6
6,060,363	-				-1.8
6,060,363	-				+0.5
6,060,363	-				-0.2
6,060,363	-				+2.2
6,060,369	+				-0.3
6,060,370	-				-0.1
6,060,377	-				+0.4
6,060,519	+				-0.1
6,060,571	-				-1.1
6,060,571	-				-0.0
6,060,693	+		PP_5312	0.39	+0.6
6,060,975	+				-0.8
6,061,145	+		PP_5313	0.26	-2.7
6,061,146	-		PP_5313	0.26	-0.7
6,061,146	-		PP_5313	0.26	-1.7
6,061,146	-		PP_5313	0.26	-1.8
6,061,367	+				-1.5
6,061,367	+				-1.4
6,061,368	-				-0.2
6,061,399	+				+0.1
6,061,400	-				+0.3
6,061,400	-				+1.2
6,061,445	+				+0.4
6,061,445	+				-2.8
6,061,445	+				-1.1
6,061,552	+				+0.3
6,061,557	-				-2.7
6,061,564	-				-0.3
6,061,626	-				+0.2
6,061,761	+		PP_5314	0.18	+0.1
6,061,762	-		PP_5314	0.18	-1.3
6,061,767	+		PP_5314	0.18	-0.1
6,061,767	+		PP_5314	0.18	-1.5
6,061,767	+				+1.6
6,061,767	+		PP_5314	0.18	+0.7
6,061,767	+		PP_5314	0.18	+0.1
6,061,847	+		PP_5314	0.25	+0.3
6,061,847	+		PP_5314	0.25	-0.5
6,061,847	+		PP_5314	0.25	-1.0
6,061,847	+		PP_5314	0.25	+0.6
6,061,847	+		PP_5314	0.25	+1.2
6,061,847	+		PP_5314	0.25	+0.4
6,061,847	+		PP_5314	0.25	-0.8
6,061,848	-		PP_5314	0.26	-0.0
6,061,911	+		PP_5314	0.31	-1.0
6,061,915	+		PP_5314	0.31	-0.4
6,061,916	-		PP_5314	0.31	-0.5
6,061,916	-		PP_5314	0.31	+0.4
6,061,927	+		PP_5314	0.32	-1.3
6,061,927	+		PP_5314	0.32	-0.0
6,061,928	-		PP_5314	0.32	-0.7
6,061,933	+		PP_5314	0.33	-0.2
6,061,977	+		PP_5314	0.37	+0.6
6,062,104	+		PP_5314	0.48	+1.2
6,062,104	+		PP_5314	0.48	+1.6
6,062,104	+		PP_5314	0.48	+0.2
6,062,105	-		PP_5314	0.48	+0.2
6,062,105	-		PP_5314	0.48	+0.3
6,062,105	-		PP_5314	0.48	-0.2
6,062,105	-		PP_5314	0.48	-0.0
6,062,105	-		PP_5314	0.48	-0.2
6,062,306	+		PP_5314	0.65	-0.2
6,062,306	+		PP_5314	0.65	-0.3
6,062,306	+		PP_5314	0.65	+0.6
6,062,307	-		PP_5314	0.65	+0.9
6,062,307	-		PP_5314	0.65	+0.2
6,062,332	+		PP_5314	0.68	-0.1