Strain Fitness in Pseudomonas putida KT2440 around PP_5275

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
6,022,626	+		PP_5273	0.64	-0.4
6,022,626	+		PP_5273	0.64	+0.2
6,022,660	+		PP_5273	0.67	+0.3
6,022,661	-		PP_5273	0.67	-2.3
6,022,663	+		PP_5273	0.67	+1.0
6,022,663	+		PP_5273	0.67	+0.4
6,022,664	-		PP_5273	0.67	+1.3
6,022,664	-		PP_5273	0.67	+0.7
6,022,712	-		PP_5273	0.71	-1.3
6,022,745	-		PP_5273	0.74	-0.3
6,022,802	-		PP_5273	0.78	+0.3
6,022,802	-		PP_5273	0.78	-0.3
6,022,880	-		PP_5273	0.84	+0.6
6,022,880	-		PP_5273	0.84	-1.5
6,022,883	-		PP_5273	0.84	-1.4
6,022,894	+		PP_5273	0.85	-0.8
6,022,894	+		PP_5273	0.85	-0.2
6,023,120	+				-0.8
6,023,121	-				-1.2
6,023,121	-				-1.1
6,023,333	+		PP_5274	0.32	-0.2
6,023,485	-		PP_5274	0.79	-0.3
6,023,485	-		PP_5274	0.79	+0.5
6,023,522	+				-0.5
6,023,522	+				-0.2
6,023,523	-				-0.0
6,023,523	-				-0.7
6,023,523	-				+1.2
6,023,533	+				-0.5
6,023,533	+				-0.4
6,023,534	-				+0.9
6,023,541	+				+0.2
6,023,542	-				+0.7
6,023,542	-				-0.4
6,023,544	+				-0.2
6,023,545	-				-0.2
6,023,633	-				+0.3
6,023,667	-				-2.2
6,023,696	-				-0.1
6,023,776	+		PP_5275	0.13	-1.1
6,023,799	+		PP_5275	0.15	+1.2
6,023,800	-				+1.2
6,024,058	+		PP_5275	0.32	+0.1
6,024,058	+				+0.6
6,024,061	+		PP_5275	0.32	-0.1
6,024,061	+		PP_5275	0.32	+0.4
6,024,061	+		PP_5275	0.32	-0.1
6,024,061	+		PP_5275	0.32	+0.5
6,024,061	+		PP_5275	0.32	-1.2
6,024,079	-		PP_5275	0.34	-0.4
6,024,157	-		PP_5275	0.39	+0.7
6,024,403	+		PP_5275	0.55	+0.5
6,024,403	+				+1.2
6,024,404	-		PP_5275	0.55	+0.1
6,024,404	-		PP_5275	0.55	+0.5
6,024,454	+		PP_5275	0.59	-0.2
6,024,455	-		PP_5275	0.59	-0.3
6,024,484	+				+3.2
6,024,485	-		PP_5275	0.61	-0.9
6,024,499	+		PP_5275	0.62	-0.6
6,024,500	-		PP_5275	0.62	+0.7
6,024,500	-		PP_5275	0.62	-0.2
6,024,500	-		PP_5275	0.62	-1.0
6,024,501	+		PP_5275	0.62	-0.3
6,024,501	+		PP_5275	0.62	-1.3
6,024,501	+		PP_5275	0.62	-0.5
6,024,501	+		PP_5275	0.62	-1.9
6,024,501	+		PP_5275	0.62	-0.4
6,024,501	+		PP_5275	0.62	+0.2
6,024,502	-		PP_5275	0.62	-1.4
6,024,502	-		PP_5275	0.62	+0.3
6,024,502	-		PP_5275	0.62	-0.5
6,024,502	-		PP_5275	0.62	-2.0
6,024,502	-		PP_5275	0.62	-0.8
6,024,505	+		PP_5275	0.62	-0.8
6,024,506	-		PP_5275	0.62	-0.8
6,024,506	-		PP_5275	0.62	+1.0
6,024,649	+		PP_5275	0.72	-1.0
6,024,649	+		PP_5275	0.72	+0.3
6,024,649	+		PP_5275	0.72	-0.3
6,024,649	+		PP_5275	0.72	-1.5
6,024,649	+		PP_5275	0.72	+1.0
6,024,650	-		PP_5275	0.72	+0.6
6,024,718	+		PP_5275	0.76	+0.1
6,024,719	-		PP_5275	0.77	+0.2
6,024,719	-		PP_5275	0.77	-0.2
6,024,731	+		PP_5275	0.77	+0.2
6,024,731	+		PP_5275	0.77	-0.1
6,024,732	-		PP_5275	0.77	-0.3
6,024,732	-		PP_5275	0.77	-0.0
6,024,793	+		PP_5275	0.81	+0.4
6,024,855	-		PP_5275	0.86	-0.7
6,024,855	-		PP_5275	0.86	-0.3
6,024,893	+		PP_5275	0.88	+0.3
6,024,893	+		PP_5275	0.88	+1.0
6,025,041	-				+0.7
6,025,067	-				-0.5
6,025,280	-				-0.5
6,025,349	+		PP_5276	0.14	-0.6
6,025,381	+		PP_5276	0.16	-0.2
6,025,382	-		PP_5276	0.16	-0.5
6,025,382	-		PP_5276	0.16	-0.6
6,025,382	-		PP_5276	0.16	-0.4
6,025,384	+		PP_5276	0.16	-0.2
6,025,384	+		PP_5276	0.16	+0.2
6,025,384	+		PP_5276	0.16	-0.3
6,025,384	+		PP_5276	0.16	+0.3
6,025,385	-		PP_5276	0.16	+0.7
6,025,385	-		PP_5276	0.16	-1.0
6,025,385	-		PP_5276	0.16	-0.2
6,025,385	-		PP_5276	0.16	+0.3
6,025,385	-		PP_5276	0.16	+0.5
6,025,385	-		PP_5276	0.16	+0.2
6,025,407	+		PP_5276	0.18	-0.8
6,025,408	-		PP_5276	0.18	-2.2
6,025,576	-		PP_5276	0.29	-0.4
6,025,584	+		PP_5276	0.29	+0.2
6,025,584	+		PP_5276	0.29	-0.8
6,025,796	-		PP_5276	0.43	+1.7
6,025,928	-		PP_5276	0.51	+0.3
6,025,945	+		PP_5276	0.53	-0.3
6,026,010	-		PP_5276	0.57	-0.8
6,026,061	-		PP_5276	0.60	+2.2
6,026,061	-		PP_5276	0.60	-0.4