Strain Fitness in Pseudomonas putida KT2440 around PP_4463

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
5,064,789	+		PP_4461	0.84	-0.4
5,064,789	+				+1.2
5,064,789	+		PP_4461	0.84	+0.2
5,064,790	-		PP_4461	0.84	-0.8
5,065,112	+				+0.4
5,065,122	+				-1.2
5,065,169	+				-0.6
5,065,169	+				-1.6
5,065,170	-				+2.8
5,065,296	+		PP_4462	0.28	+0.6
5,065,326	-		PP_4462	0.33	+0.6
5,065,505	+		PP_4462	0.60	+0.8
5,065,505	+		PP_4462	0.60	+0.3
5,065,506	-		PP_4462	0.60	-0.3
5,065,547	+		PP_4462	0.66	-0.5
5,065,564	+		PP_4462	0.69	-0.9
5,065,564	+		PP_4462	0.69	-1.3
5,065,564	+		PP_4462	0.69	-0.2
5,065,565	-		PP_4462	0.69	+0.3
5,065,573	-		PP_4462	0.70	-0.8
5,065,599	+		PP_4462	0.74	+0.4
5,065,600	-		PP_4462	0.74	+1.2
5,065,631	+		PP_4462	0.79	-0.6
5,065,749	-				-0.6
5,065,755	+				+0.5
5,065,850	+				-0.6
5,065,850	+				-0.2
5,065,851	-				-1.9
5,065,851	-				-0.2
5,065,927	-		PP_4463	0.19	+0.8
5,065,981	-		PP_4463	0.26	-1.3
5,065,981	-		PP_4463	0.26	+0.4
5,066,015	+		PP_4463	0.30	-1.6
5,066,015	+		PP_4463	0.30	+0.1
5,066,033	-		PP_4463	0.32	-0.5
5,066,047	+		PP_4463	0.34	+0.5
5,066,048	-				+1.2
5,066,069	+		PP_4463	0.36	+0.4
5,066,069	+		PP_4463	0.36	+0.9
5,066,070	-		PP_4463	0.37	-0.0
5,066,070	-		PP_4463	0.37	-0.9
5,066,124	+		PP_4463	0.43	-0.0
5,066,142	+		PP_4463	0.45	+0.5
5,066,143	-		PP_4463	0.45	+0.1
5,066,146	+		PP_4463	0.46	-0.0
5,066,146	+		PP_4463	0.46	-0.2
5,066,146	+		PP_4463	0.46	-0.1
5,066,147	-		PP_4463	0.46	-0.4
5,066,147	-		PP_4463	0.46	+0.5
5,066,147	-		PP_4463	0.46	-0.3
5,066,172	-		PP_4463	0.49	+0.8
5,066,180	-		PP_4463	0.50	+1.2
5,066,190	-		PP_4463	0.51	-0.2
5,066,190	-		PP_4463	0.51	-0.5
5,066,252	-		PP_4463	0.59	+0.3
5,066,302	+		PP_4463	0.65	+0.3
5,066,302	+		PP_4463	0.65	+0.6
5,066,303	-		PP_4463	0.65	-0.2
5,066,303	-		PP_4463	0.65	-0.7
5,066,303	-				+2.8
5,066,305	-		PP_4463	0.65	+0.0
5,066,305	-		PP_4463	0.65	-0.7
5,066,341	+		PP_4463	0.70	-0.1
5,066,355	+		PP_4463	0.71	+0.4
5,066,355	+		PP_4463	0.71	+0.8
5,066,356	-		PP_4463	0.71	+1.0
5,066,384	-		PP_4463	0.75	+0.4
5,066,446	+		PP_4463	0.82	+0.1
5,066,447	-		PP_4463	0.82	-0.2
5,066,447	-		PP_4463	0.82	-0.4
5,066,665	-				-0.7
5,066,712	+				+0.1
5,066,879	+		PP_4464	0.27	-0.6
5,066,884	+		PP_4464	0.28	-0.2
5,066,919	-		PP_4464	0.32	+0.2
5,066,976	+		PP_4464	0.38	-1.1
5,067,096	+		PP_4464	0.51	+0.1
5,067,096	+		PP_4464	0.51	-0.0
5,067,146	+		PP_4464	0.57	-0.4
5,067,146	+		PP_4464	0.57	+1.5
5,067,253	-		PP_4464	0.69	+0.9
5,067,340	-		PP_4464	0.78	-0.7
5,067,431	-		PP_4464	0.88	+0.5
5,067,513	+				-0.5
5,067,531	-				-0.0
5,067,563	+				-0.3
5,067,587	-				+0.5