Strain Fitness in Pseudomonas putida KT2440 around PP_4150

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
4,688,263	-		PP_4149	0.16	+0.4
4,688,328	+		PP_4149	0.22	-0.0
4,688,329	-		PP_4149	0.22	-0.1
4,688,340	+		PP_4149	0.24	-0.0
4,688,340	+		PP_4149	0.24	-0.7
4,688,341	-		PP_4149	0.24	+0.7
4,688,341	-		PP_4149	0.24	-1.5
4,688,341	-		PP_4149	0.24	+0.7
4,688,418	+		PP_4149	0.31	-0.7
4,688,418	+		PP_4149	0.31	+1.8
4,688,418	+		PP_4149	0.31	-0.3
4,688,418	+		PP_4149	0.31	-0.8
4,688,419	-		PP_4149	0.31	+0.8
4,688,419	-				+3.2
4,688,419	-		PP_4149	0.31	-0.5
4,688,419	-		PP_4149	0.31	-1.8
4,688,512	-		PP_4149	0.40	-0.2
4,688,512	-		PP_4149	0.40	+0.1
4,688,602	-		PP_4149	0.49	+0.0
4,688,602	-		PP_4149	0.49	-0.0
4,688,602	-		PP_4149	0.49	-0.8
4,688,667	+		PP_4149	0.56	-1.0
4,688,667	+		PP_4149	0.56	+0.4
4,688,667	+		PP_4149	0.56	-0.9
4,688,668	-		PP_4149	0.56	-1.1
4,688,800	-		PP_4149	0.69	-0.9
4,688,848	-		PP_4149	0.73	+0.4
4,689,738	+		PP_4150	0.38	+0.1
4,689,877	+		PP_4150	0.47	-0.1
4,689,877	+		PP_4150	0.47	-0.6
4,689,877	+		PP_4150	0.47	-1.5
4,689,877	+		PP_4150	0.47	-0.1
4,689,878	-		PP_4150	0.47	+0.1
4,690,352	+		PP_4150	0.77	+0.5
4,690,352	+		PP_4150	0.77	-0.2
4,690,352	+		PP_4150	0.77	-0.9
4,690,497	-		PP_4150	0.86	+0.4
4,690,552	+		PP_4150	0.89	-0.9
4,690,678	+				+0.1
4,690,678	+				+0.8
4,690,679	-				+0.1
4,690,679	-				-0.6
4,690,723	+				-2.3
4,690,724	-				-0.3
4,690,726	+				+0.9
4,690,726	+				-0.0
4,690,727	-				-1.6
4,690,727	-				+0.7
4,690,727	-				+0.2
4,690,806	-				-0.9
4,691,034	-		PP_4151	0.35	+0.0
4,691,034	-		PP_4151	0.35	-1.5
4,691,055	-		PP_4151	0.40	+0.7
4,691,055	-		PP_4151	0.40	-0.6
4,691,089	-		PP_4151	0.47	+0.5
4,691,089	-		PP_4151	0.47	+0.6
4,691,089	-		PP_4151	0.47	+0.7
4,691,124	-		PP_4151	0.54	-0.8
4,691,152	-		PP_4151	0.60	+0.2
4,691,362	+				+0.8
4,691,362	+				+0.6
4,691,363	-				-0.4
4,691,364	+				-0.4
4,691,364	+				-0.1
4,691,365	-				-0.6
4,691,365	-				+0.2
4,691,377	+				-0.3
4,691,377	+				+0.1
4,691,378	-				-0.8
4,691,382	+				+0.1
4,691,383	-				-0.2
4,691,416	+		PP_4152	0.14	-2.2
4,691,417	-		PP_4152	0.14	-0.5
4,691,433	+		PP_4152	0.17	-0.0
4,691,433	+		PP_4152	0.17	-0.2
4,691,434	-		PP_4152	0.17	+0.3
4,691,434	-		PP_4152	0.17	+0.7
4,691,434	-		PP_4152	0.17	+1.4
4,691,609	+		PP_4152	0.47	-1.9
4,691,610	-		PP_4152	0.47	-0.5