Strain Fitness in Pseudomonas putida KT2440 around PP_4011

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
4,519,515	-				-0.3
4,519,519	+				-1.5
4,519,519	+				+0.7
4,519,519	+				-0.3
4,519,519	+				-0.7
4,519,519	+				+0.3
4,519,519	+				-0.3
4,519,519	+				-0.7
4,519,519	+				-1.7
4,519,520	-				-0.0
4,519,520	-				-0.5
4,519,520	-				+0.9
4,519,520	-				-0.2
4,519,532	+				+0.1
4,519,533	-				-0.8
4,519,533	-				+0.0
4,519,578	-				+0.5
4,519,645	+		PP_4009	0.26	+0.1
4,519,765	-		PP_4009	0.59	+0.2
4,519,765	-		PP_4009	0.59	-1.4
4,519,791	+		PP_4009	0.66	-0.3
4,519,791	+		PP_4009	0.66	-0.7
4,519,792	-		PP_4009	0.67	-0.1
4,519,792	-		PP_4009	0.67	-0.3
4,519,900	+				+1.3
4,519,900	+				+2.0
4,519,901	-				-0.8
4,520,016	+				+0.7
4,520,017	-				-0.4
4,520,025	+				-0.5
4,520,026	-				-1.3
4,520,026	-				-0.8
4,520,105	+				-1.2
4,520,105	+				-0.9
4,520,105	+				-1.3
4,520,105	+				+0.7
4,520,106	-				-0.7
4,520,138	+				-0.0
4,520,139	-				+0.3
4,520,139	-				+0.5
4,520,139	-				-0.4
4,520,185	+		PP_4010	0.16	-1.0
4,520,208	+		PP_4010	0.24	-0.2
4,520,233	+		PP_4010	0.34	-1.6
4,520,258	-		PP_4010	0.43	-0.4
4,520,258	-		PP_4010	0.43	+0.3
4,520,289	-		PP_4010	0.55	-0.1
4,520,289	-		PP_4010	0.55	-1.4
4,520,454	-				-0.5
4,520,482	+				-0.7
4,520,482	+				-1.3
4,520,482	+				-1.2
4,520,482	+				-1.4
4,520,483	-				+1.3
4,520,483	-				-0.2
4,520,483	-				-0.3
4,520,483	-				+0.6
4,520,483	-				-0.8
4,520,523	+				-0.2
4,520,560	+				-0.8
4,520,561	-				-1.5
4,520,698	+		PP_4011	0.17	-0.3
4,520,699	-		PP_4011	0.17	-1.3
4,520,699	-		PP_4011	0.17	-2.0
4,520,699	-		PP_4011	0.17	-1.1
4,520,699	-		PP_4011	0.17	-1.6
4,520,809	+		PP_4011	0.26	-0.4
4,520,809	+		PP_4011	0.26	-1.0
4,520,810	-		PP_4011	0.26	+0.8
4,520,810	-		PP_4011	0.26	-0.5
4,520,846	-		PP_4011	0.29	-0.7
4,520,996	-		PP_4011	0.41	+0.4
4,521,085	+		PP_4011	0.48	+0.4
4,521,085	+		PP_4011	0.48	+0.0
4,521,086	-		PP_4011	0.48	-1.1
4,521,086	-		PP_4011	0.48	-0.2
4,521,086	-		PP_4011	0.48	-1.0
4,521,086	-		PP_4011	0.48	-1.1
4,521,086	-		PP_4011	0.48	-0.5
4,521,253	+		PP_4011	0.61	-2.9
4,521,253	+		PP_4011	0.61	+0.7
4,521,254	-		PP_4011	0.61	+0.1
4,521,254	-		PP_4011	0.61	-2.1
4,521,254	-		PP_4011	0.61	+0.2
4,521,254	-		PP_4011	0.61	-1.3
4,521,254	-		PP_4011	0.61	-0.6
4,521,354	+		PP_4011	0.69	+0.1
4,521,354	+		PP_4011	0.69	-1.5
4,521,354	+		PP_4011	0.69	-0.5
4,521,354	+		PP_4011	0.69	-1.7
4,521,354	+		PP_4011	0.69	+1.3
4,521,354	+		PP_4011	0.69	+0.6
4,521,355	-		PP_4011	0.70	-0.2
4,521,355	-		PP_4011	0.70	-1.7
4,521,355	-		PP_4011	0.70	-0.7
4,521,355	-		PP_4011	0.70	-2.4
4,521,355	-		PP_4011	0.70	-2.0
4,521,355	-		PP_4011	0.70	-0.5
4,521,355	-		PP_4011	0.70	-0.2
4,521,355	-		PP_4011	0.70	-1.4
4,521,355	-		PP_4011	0.70	-0.2
4,521,358	+		PP_4011	0.70	+0.0
4,521,358	+		PP_4011	0.70	-1.1
4,521,358	+		PP_4011	0.70	+0.4
4,521,358	+		PP_4011	0.70	-0.0
4,521,358	+		PP_4011	0.70	+0.1
4,521,358	+		PP_4011	0.70	-0.5
4,521,358	+		PP_4011	0.70	-1.0
4,521,358	+		PP_4011	0.70	-0.7
4,521,358	+		PP_4011	0.70	-1.2
4,521,358	+		PP_4011	0.70	+0.3
4,521,358	+		PP_4011	0.70	-0.7
4,521,358	+		PP_4011	0.70	-0.6
4,521,359	-		PP_4011	0.70	-1.0
4,521,359	-		PP_4011	0.70	-1.1
4,521,359	-		PP_4011	0.70	-2.5
4,521,359	-		PP_4011	0.70	-1.3
4,521,359	-		PP_4011	0.70	-2.5
4,521,359	-		PP_4011	0.70	-0.1
4,521,359	-		PP_4011	0.70	-0.2
4,521,359	-		PP_4011	0.70	+0.4
4,521,359	-		PP_4011	0.70	-1.4
4,521,359	-		PP_4011	0.70	-0.9
4,521,359	-		PP_4011	0.70	-1.1
4,521,359	-		PP_4011	0.70	+1.0
4,521,359	-		PP_4011	0.70	-0.7
4,521,359	-		PP_4011	0.70	-0.1
4,521,359	-		PP_4011	0.70	-0.8
4,521,448	+		PP_4011	0.77	-1.5
4,521,449	-		PP_4011	0.77	-0.9
4,521,449	-		PP_4011	0.77	-0.6
4,521,449	-		PP_4011	0.77	-1.5
4,521,449	-		PP_4011	0.77	-0.0
4,521,449	-		PP_4011	0.77	-0.9
4,521,489	-		PP_4011	0.80	+0.7
4,521,489	-		PP_4011	0.80	-0.8
4,521,499	+		PP_4011	0.81	-1.8
4,521,499	+		PP_4011	0.81	-0.2
4,521,499	+		PP_4011	0.81	-0.2
4,521,500	-		PP_4011	0.81	-0.0
4,521,527	-		PP_4011	0.83	-0.8
4,521,562	+		PP_4011	0.86	-0.5
4,521,640	+				+0.4
4,521,640	+				-0.5
4,521,640	+				-0.1
4,521,640	+				-0.7
4,521,640	+				-0.8
4,521,641	-				-0.4
4,521,668	+				-0.4
4,521,747	-				-0.5
4,521,747	-				-1.6
4,521,847	-				-0.2
4,521,847	-				-1.3
4,521,859	+				-0.6
4,521,861	+				-1.6
4,521,862	-				+1.7
4,521,893	+				+0.8
4,521,893	+				-0.2
4,521,893	+				-1.1
4,521,894	-				-2.2
4,521,911	-				+0.5
4,521,912	+				-0.2
4,521,969	+				-0.0
4,522,098	+				-0.2
4,522,098	+				-0.1