Strain Fitness in Pseudomonas putida KT2440 around PP_3750

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
4,277,838	+				+0.1
4,277,838	+				+1.3
4,277,998	+		PP_3748	0.41	-0.3
4,277,998	+		PP_3748	0.41	+0.8
4,278,170	+		PP_3748	0.84	-2.6
4,278,171	-		PP_3748	0.85	-0.2
4,278,229	+				-1.2
4,278,229	+				-0.5
4,278,230	-				-0.4
4,278,262	+				+0.7
4,278,262	+				+0.9
4,278,262	+				+0.8
4,278,263	-				+0.2
4,278,263	-				+0.5
4,278,263	-				-0.8
4,278,297	-				+0.5
4,278,583	+		PP_3749	0.63	+0.7
4,278,583	+		PP_3749	0.63	+0.0
4,278,583	+		PP_3749	0.63	-1.4
4,278,583	+		PP_3749	0.63	-0.4
4,278,584	-		PP_3749	0.63	-0.4
4,278,584	-		PP_3749	0.63	+1.8
4,278,584	-		PP_3749	0.63	-0.7
4,278,584	-		PP_3749	0.63	-0.1
4,278,584	-		PP_3749	0.63	+0.9
4,278,584	-		PP_3749	0.63	+0.3
4,278,680	+				+0.4
4,278,680	+				-0.6
4,278,680	+				+0.5
4,278,681	-				-0.7
4,278,681	-				+0.3
4,278,682	+				-0.1
4,278,683	-				-0.5
4,278,683	-				-0.7
4,278,683	-				-0.1
4,278,852	+				-0.0
4,278,984	+		PP_3750	0.13	+1.2
4,278,984	+		PP_3750	0.13	+0.1
4,278,985	-		PP_3750	0.13	+0.3
4,279,225	-		PP_3750	0.30	-1.6
4,279,225	-		PP_3750	0.30	-1.0
4,279,225	-		PP_3750	0.30	-0.3
4,279,554	+		PP_3750	0.53	-0.1
4,279,554	+		PP_3750	0.53	+1.5
4,279,555	-		PP_3750	0.53	-0.2
4,279,555	-		PP_3750	0.53	-1.7
4,279,555	-		PP_3750	0.53	-1.2
4,279,665	+		PP_3750	0.60	-0.3
4,279,666	-		PP_3750	0.60	-1.3
4,279,741	-		PP_3750	0.66	-0.6
4,279,741	-		PP_3750	0.66	+0.2
4,279,741	-		PP_3750	0.66	-0.1
4,279,788	+		PP_3750	0.69	+1.0
4,279,795	+		PP_3750	0.69	-0.3
4,279,795	+		PP_3750	0.69	+1.2
4,279,796	-		PP_3750	0.69	-0.2
4,279,810	+		PP_3750	0.70	-1.6
4,279,938	+		PP_3750	0.79	-0.1
4,280,084	+		PP_3750	0.89	-1.9
4,280,085	-		PP_3750	0.90	-0.4
4,280,089	+		PP_3750	0.90	-0.9
4,280,095	+				-2.7
4,280,095	+				+0.3
4,280,095	+				-1.4
4,280,103	+				-0.1
4,280,103	+				+0.7
4,280,104	-				-0.3
4,280,104	-				-0.7
4,280,104	-				+0.3
4,280,149	+				-0.2
4,280,395	-		PP_3751	0.14	+0.2
4,280,395	-		PP_3751	0.14	-1.9
4,280,396	+		PP_3751	0.14	-0.9
4,280,397	-		PP_3751	0.14	-1.1
4,280,397	-		PP_3751	0.14	+0.4
4,280,428	-		PP_3751	0.17	-1.1
4,280,434	+		PP_3751	0.17	+0.3
4,280,747	+		PP_3751	0.43	-0.4
4,280,748	-		PP_3751	0.44	-0.3
4,280,748	-		PP_3751	0.44	-1.6
4,280,777	+		PP_3751	0.46	-0.7
4,280,777	+		PP_3751	0.46	-1.0
4,280,802	-		PP_3751	0.48	-0.1
4,280,933	-		PP_3751	0.59	-0.2
4,280,933	-		PP_3751	0.59	+0.2