Strain Fitness in Pseudomonas putida KT2440 around PP_3590

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
4,078,641	-		PP_3589	0.57	-0.2
4,078,842	+		PP_3589	0.72	+0.8
4,078,842	+		PP_3589	0.72	-1.1
4,078,842	+		PP_3589	0.72	+0.4
4,078,842	+		PP_3589	0.72	+0.3
4,078,871	+		PP_3589	0.75	-0.7
4,078,872	-		PP_3589	0.75	-0.5
4,078,988	+		PP_3589	0.84	+0.5
4,078,989	-		PP_3589	0.84	-1.4
4,079,247	+				-0.1
4,079,439	-				-0.3
4,079,581	+				-0.9
4,079,581	+				+0.1
4,079,581	+				+0.6
4,079,671	+				-1.4
4,079,672	-				-1.7
4,079,700	+		PP_3590	0.10	-1.4
4,079,725	+		PP_3590	0.12	-2.0
4,079,725	+		PP_3590	0.12	-2.4
4,079,726	-		PP_3590	0.12	-1.3
4,079,822	+		PP_3590	0.20	+0.1
4,079,823	-		PP_3590	0.20	-2.2
4,079,823	-		PP_3590	0.20	-1.7
4,079,823	-		PP_3590	0.20	-2.0
4,079,926	+		PP_3590	0.29	-2.4
4,080,022	+		PP_3590	0.37	-0.5
4,080,098	-		PP_3590	0.43	-1.7
4,080,250	-		PP_3590	0.56	-1.1
4,080,328	+		PP_3590	0.62	-1.5
4,080,328	+		PP_3590	0.62	-3.3
4,080,481	-		PP_3590	0.75	-3.1
4,080,580	+		PP_3590	0.84	-1.0
4,080,580	+		PP_3590	0.84	+0.7
4,080,581	-		PP_3590	0.84	-3.4
4,080,668	-				-1.0
4,080,668	-				-3.0
4,080,671	-				-2.9
4,080,671	-				-3.3
4,080,681	-				-1.0
4,080,754	+				-2.1
4,080,755	-				-1.3
4,080,856	+				-0.2
4,080,873	+				-0.9
4,080,873	+				-1.1
4,080,874	-				-0.3
4,081,335	+		PP_3591	0.40	+0.2
4,081,335	+		PP_3591	0.40	+1.1
4,081,711	+		PP_3591	0.77	-0.5
4,081,712	-		PP_3591	0.77	-1.5
4,081,712	-		PP_3591	0.77	+0.5