Strain Fitness in Pseudomonas putida KT2440 around PP_2676

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
3,063,187	+		PP_2674	0.85	-0.1
3,063,187	+		PP_2674	0.85	+0.1
3,063,453	+				+0.6
3,063,453	+				-0.2
3,063,454	-				-0.2
3,063,554	-				+0.5
3,063,596	+				-0.2
3,063,597	-				-0.6
3,063,599	+				+0.7
3,063,600	-				-0.7
3,063,610	+				-0.0
3,063,658	-				-0.6
3,063,658	-				-0.2
3,063,658	-				+0.5
3,063,711	+				+0.4
3,063,712	-				-0.6
3,063,713	-				+0.7
3,064,091	+		PP_2675	0.81	-0.1
3,064,091	+		PP_2675	0.81	+0.3
3,064,092	-		PP_2675	0.81	-0.3
3,064,092	-		PP_2675	0.81	-0.2
3,064,113	-		PP_2675	0.86	+0.0
3,064,148	+				-0.9
3,064,149	-				-0.7
3,064,255	+		PP_2676	0.13	+0.3
3,064,256	-		PP_2676	0.13	-1.3
3,064,256	-		PP_2676	0.13	-0.9
3,064,256	-		PP_2676	0.13	+0.2
3,064,450	+		PP_2676	0.34	-0.3
3,064,451	-		PP_2676	0.34	+0.6
3,064,451	-		PP_2676	0.34	-0.4
3,064,513	+		PP_2676	0.41	+0.5
3,064,514	-		PP_2676	0.41	-0.4
3,064,672	-		PP_2676	0.58	-0.2
3,064,954	+		PP_2676	0.89	-0.3
3,064,954	+		PP_2676	0.89	-0.9
3,064,954	+		PP_2676	0.89	-0.4
3,064,954	+		PP_2676	0.89	-0.8
3,064,955	-		PP_2676	0.89	-1.0
3,064,955	-		PP_2676	0.89	-0.7
3,064,955	-		PP_2676	0.89	+0.8
3,065,012	-				+0.3
3,065,012	-				+0.1
3,065,012	-				+0.2
3,065,012	-				+0.3
3,065,032	+				-0.2
3,065,050	+				-0.2
3,065,050	+				-0.4
3,065,051	-				-0.4
3,065,051	-				+0.7
3,065,056	+				+0.1
3,065,056	+				-0.3
3,065,176	-		PP_2677	0.15	+0.8
3,065,315	+		PP_2677	0.33	+0.0
3,065,501	+		PP_2677	0.57	+0.7
3,065,675	-		PP_2677	0.80	+0.5