Strain Fitness in Pseudomonas putida KT2440 around PP_2650

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
3,036,777	+		PP_2649	0.14	+0.3
3,036,777	+		PP_2649	0.14	-0.7
3,036,778	-		PP_2649	0.14	-0.7
3,037,100	+		PP_2649	0.48	+0.2
3,037,100	+		PP_2649	0.48	+0.8
3,037,100	+		PP_2649	0.48	-0.7
3,037,101	-		PP_2649	0.48	-0.0
3,037,101	-		PP_2649	0.48	-0.1
3,037,473	-		PP_2649	0.88	+0.0
3,037,522	+				-0.5
3,037,607	-				-0.5
3,037,628	+				-1.9
3,037,629	-				-0.4
3,037,728	+				-1.4
3,037,729	-				-0.5
3,037,729	-				-1.1
3,037,744	+				+1.2
3,037,745	-				+1.8
3,037,745	-				-0.7
3,037,812	+				-0.3
3,037,812	+				+0.6
3,037,814	+				+0.3
3,037,869	+		PP_2650	0.12	-1.2
3,037,915	+		PP_2650	0.16	-0.4
3,037,915	+		PP_2650	0.16	-1.1
3,038,716	-		PP_2650	0.86	-0.7
3,038,870	-				+0.0
3,038,895	+				+0.4
3,038,896	-				-0.1
3,038,896	-				+0.0
3,038,896	-				+0.4
3,038,921	+				-0.3
3,038,928	+				-0.3
3,039,039	+				-0.2
3,039,039	+				+0.3
3,039,040	-				+0.4
3,039,071	+		PP_2651	0.12	+0.2
3,039,071	+		PP_2651	0.12	+0.1
3,039,144	+		PP_2651	0.17	+0.2
3,039,145	-		PP_2651	0.17	+0.0
3,039,145	-		PP_2651	0.17	-0.0
3,039,145	-		PP_2651	0.17	-0.2
3,039,526	-		PP_2651	0.45	+1.3
3,039,714	+		PP_2651	0.59	+0.4
3,039,714	+		PP_2651	0.59	-0.2
3,039,715	-		PP_2651	0.59	+0.8
3,039,715	-		PP_2651	0.59	+0.3
3,039,715	-		PP_2651	0.59	-1.0
3,039,715	-		PP_2651	0.59	+0.2
3,039,715	-		PP_2651	0.59	-0.1
3,039,715	-		PP_2651	0.59	-0.3
3,039,715	-		PP_2651	0.59	+0.1
3,039,750	+		PP_2651	0.62	+0.1
3,039,810	+		PP_2651	0.67	+0.3
3,039,811	-		PP_2651	0.67	+0.1