Strain Fitness in Pseudomonas putida KT2440 around PP_2642

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
3,025,692	+		PP_2641	0.48	-0.4
3,025,692	+		PP_2641	0.48	-1.0
3,025,692	+		PP_2641	0.48	-0.3
3,025,692	+		PP_2641	0.48	+0.3
3,025,692	+		PP_2641	0.48	+0.3
3,025,693	-		PP_2641	0.48	-0.2
3,025,742	+		PP_2641	0.50	-0.5
3,025,742	+		PP_2641	0.50	+0.2
3,025,742	+		PP_2641	0.50	+0.4
3,025,744	+		PP_2641	0.50	-0.3
3,025,744	+		PP_2641	0.50	-0.8
3,025,854	+		PP_2641	0.57	+0.5
3,025,855	-		PP_2641	0.57	+0.7
3,025,904	+		PP_2641	0.59	-0.0
3,026,154	+		PP_2641	0.73	-0.3
3,026,154	+		PP_2641	0.73	-0.7
3,026,155	-		PP_2641	0.73	-0.0
3,026,353	-		PP_2641	0.84	+0.9
3,026,593	+				-0.0
3,026,593	+				+0.4
3,026,593	+				+1.5
3,026,593	+				-0.1
3,026,593	+				+0.0
3,026,594	-				+0.5
3,026,594	-				+0.3
3,026,595	+				+0.6
3,026,596	-				+0.9
3,026,651	-				+0.5
3,026,822	+		PP_2642	0.12	+0.1
3,026,822	+		PP_2642	0.12	+0.3
3,026,823	-		PP_2642	0.13	+0.4
3,026,969	+		PP_2642	0.22	-0.2
3,027,081	-		PP_2642	0.30	+0.2
3,027,217	+		PP_2642	0.39	-0.2
3,027,218	-		PP_2642	0.39	+0.4
3,027,437	+		PP_2642	0.54	+0.8
3,027,437	+		PP_2642	0.54	+0.4
3,027,437	+		PP_2642	0.54	-0.8
3,027,437	+		PP_2642	0.54	-0.4
3,027,438	-		PP_2642	0.54	+1.0
3,027,438	-		PP_2642	0.54	-0.1
3,027,438	-		PP_2642	0.54	+0.3
3,027,438	-		PP_2642	0.54	+1.5
3,027,442	-		PP_2642	0.54	-0.3
3,027,442	-		PP_2642	0.54	+0.0
3,027,548	+		PP_2642	0.61	-0.8
3,027,549	-		PP_2642	0.61	+1.2
3,027,555	-		PP_2642	0.62	+1.9
3,027,581	+		PP_2642	0.63	-0.7
3,027,671	+		PP_2642	0.69	-0.5
3,027,671	+		PP_2642	0.69	+1.0
3,027,671	+		PP_2642	0.69	-0.2
3,027,672	-		PP_2642	0.69	-0.2
3,027,672	-		PP_2642	0.69	-1.0
3,027,673	+		PP_2642	0.70	-1.8
3,027,674	-		PP_2642	0.70	-1.1
3,028,038	+				-0.7
3,028,102	+				+0.1
3,028,102	+				-0.0
3,028,103	-				-0.4
3,028,198	+				+0.3
3,028,211	+				+0.4
3,028,212	-				+0.5
3,028,219	-				-0.6
3,028,304	+				-0.0
3,028,305	-				+1.8
3,028,365	+				+0.0
3,028,365	+				-0.2
3,028,366	-				-0.1
3,028,366	-				+0.4
3,028,366	-				-0.5
3,028,807	+		PP_2643	0.28	-1.4
3,028,807	+		PP_2643	0.28	-1.0
3,028,807	+		PP_2643	0.28	+0.0
3,028,808	-		PP_2643	0.28	-0.6
3,028,808	-		PP_2643	0.28	-1.4
3,029,097	+		PP_2643	0.45	+0.7