Strain Fitness in Pseudomonas putida KT2440 around PP_2552

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,896,865	+		PP_2551	0.19	-1.2
2,896,865	+		PP_2551	0.19	+0.1
2,896,865	+		PP_2551	0.19	-0.4
2,896,866	-		PP_2551	0.19	+0.4
2,896,866	-		PP_2551	0.19	+1.0
2,896,874	-		PP_2551	0.20	-0.8
2,897,000	+		PP_2551	0.34	+0.1
2,897,097	-				+0.7
2,897,197	-		PP_2551	0.54	-2.6
2,897,255	+		PP_2551	0.61	-1.0
2,897,264	+		PP_2551	0.62	-0.9
2,897,265	-		PP_2551	0.62	+0.0
2,897,382	+		PP_2551	0.74	-0.5
2,897,631	+				+1.0
2,897,631	+				+0.5
2,897,632	-				+1.2
2,897,663	-				+0.7
2,897,670	+				-0.2
2,897,671	-				+0.9
2,897,671	-				+1.8
2,897,671	-				-0.0
2,897,773	-				-0.9
2,897,885	-				+0.8
2,897,885	-				+2.9
2,897,959	-				+1.3
2,898,004	+		PP_2552	0.16	-1.1
2,898,004	+		PP_2552	0.16	+0.7
2,898,004	+		PP_2552	0.16	-0.7
2,898,010	+		PP_2552	0.17	+0.3
2,898,011	-		PP_2552	0.17	-1.5
2,898,247	+		PP_2552	0.33	-0.7
2,898,248	-		PP_2552	0.33	+0.2
2,898,257	+		PP_2552	0.34	-0.5
2,898,257	+		PP_2552	0.34	-0.2
2,898,258	-		PP_2552	0.34	-0.8
2,898,298	+		PP_2552	0.37	-1.4
2,898,298	+		PP_2552	0.37	-0.1
2,898,366	+		PP_2552	0.42	-0.7
2,898,395	-		PP_2552	0.44	-0.6
2,898,691	+		PP_2552	0.65	+0.4
2,898,691	+		PP_2552	0.65	-0.0
2,898,692	-		PP_2552	0.65	-0.1
2,898,694	+		PP_2552	0.65	+0.6
2,898,695	-		PP_2552	0.65	-0.5
2,898,957	-		PP_2552	0.84	-0.8
2,899,023	+		PP_2552	0.88	+0.1
2,899,066	+				-0.3
2,899,066	+				-0.6
2,899,066	+				+0.4
2,899,066	+				+0.4
2,899,067	-				+0.4
2,899,067	-				-0.4
2,899,081	-				-1.1
2,899,196	-				-0.2
2,899,201	-				+0.6
2,899,201	-				+0.2
2,899,201	-				-0.2
2,899,206	+				-0.9
2,899,255	-				-1.2
2,899,255	-				+0.2
2,899,285	+				+0.4
2,899,299	+				-0.0
2,899,299	+				+0.4
2,899,300	-				-0.6
2,899,300	-				-1.2
2,899,300	-				+0.7
2,899,300	-				-0.9
2,899,300	-				-0.5
2,899,300	-				+0.9
2,899,377	+				-0.8
2,899,377	+				+0.1
2,899,377	+				+0.6
2,899,378	-				-1.5
2,899,427	+		PP_2553	0.12	-0.5
2,899,427	+		PP_2553	0.12	+0.0
2,899,564	-		PP_2553	0.22	+0.2
2,899,588	-		PP_2553	0.24	-1.1
2,899,597	-		PP_2553	0.25	-0.4
2,899,663	-		PP_2553	0.30	-0.8
2,899,781	-		PP_2553	0.38	-0.9
2,899,804	-		PP_2553	0.40	-0.3
2,899,804	-		PP_2553	0.40	-0.2
2,899,805	+		PP_2553	0.40	-0.8
2,899,805	+		PP_2553	0.40	+0.3
2,899,806	-		PP_2553	0.40	-0.4
2,899,806	-		PP_2553	0.40	-0.0
2,899,806	-		PP_2553	0.40	+0.3
2,899,806	-		PP_2553	0.40	+0.1
2,900,110	-		PP_2553	0.62	+0.3
2,900,126	+		PP_2553	0.63	-0.6
2,900,126	+		PP_2553	0.63	+0.9
2,900,181	+		PP_2553	0.67	-0.2
2,900,182	-		PP_2553	0.67	+0.3
2,900,182	-		PP_2553	0.67	-1.2
2,900,184	+		PP_2553	0.68	+0.7
2,900,185	-		PP_2553	0.68	+0.5
2,900,185	-		PP_2553	0.68	+0.2