Strain Fitness in Pseudomonas putida KT2440 around PP_2426

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,772,001	+		PP_2425	0.10	-0.7
2,772,194	-		PP_2425	0.31	-0.7
2,772,298	+		PP_2425	0.43	+1.4
2,772,331	-		PP_2425	0.46	+0.4
2,772,584	-		PP_2425	0.74	-0.3
2,772,584	-		PP_2425	0.74	-0.4
2,772,598	+		PP_2425	0.76	-0.8
2,772,598	+		PP_2425	0.76	+1.2
2,772,598	+		PP_2425	0.76	+0.9
2,772,691	+		PP_2425	0.86	+0.1
2,772,691	+		PP_2425	0.86	-0.7
2,772,692	-		PP_2425	0.86	+0.6
2,772,692	-		PP_2425	0.86	+0.3
2,772,692	-		PP_2425	0.86	+1.1
2,772,692	-		PP_2425	0.86	-0.8
2,772,692	-		PP_2425	0.86	-0.6
2,772,897	-				+0.5
2,773,000	+				-0.0
2,773,001	-				+0.7
2,773,001	-				+0.6
2,773,001	-				-1.6
2,773,106	-		PP_2426	0.10	-0.3
2,773,106	-		PP_2426	0.10	+0.8
2,773,316	-		PP_2426	0.30	-0.2
2,773,343	-		PP_2426	0.33	+1.0
2,773,343	-		PP_2426	0.33	-0.5
2,773,489	+		PP_2426	0.47	-0.3
2,773,489	+		PP_2426	0.47	+0.1
2,773,489	+		PP_2426	0.47	+0.8
2,773,982	-				-0.3
2,773,982	-				-1.9
2,774,011	+				-2.0
2,774,096	-				+0.5
2,774,111	-				-1.7
2,774,135	-				+0.7
2,774,352	+		PP_5521	0.14	-0.7
2,774,352	+		PP_5521	0.14	-0.4
2,774,352	+		PP_5521	0.14	-1.4
2,774,352	+		PP_5521	0.14	-0.4
2,774,353	-		PP_5521	0.14	-0.8
2,774,353	-		PP_5521	0.14	-0.3
2,774,353	-		PP_5521	0.14	-0.8
2,774,353	-		PP_5521	0.14	+0.7
2,774,371	+		PP_5521	0.16	+0.7
2,774,398	-		PP_5521	0.18	-1.7
2,774,398	-		PP_5521	0.18	+0.3
2,774,403	+		PP_5521	0.18	+0.2
2,774,403	+		PP_5521	0.18	-1.0
2,774,404	-		PP_5521	0.18	-0.9
2,774,422	-		PP_5521	0.19	-0.6
2,774,448	+		PP_5521	0.21	+0.2
2,774,448	+		PP_5521	0.21	+1.2
2,774,448	+		PP_5521	0.21	+0.2
2,774,448	+		PP_5521	0.21	+0.4
2,774,449	-		PP_5521	0.21	+0.7
2,774,496	+		PP_5521	0.25	+1.3
2,774,497	-		PP_5521	0.25	+0.5
2,774,497	-		PP_5521	0.25	-0.4
2,774,499	+		PP_5521	0.25	-0.9
2,774,843	+		PP_5521	0.51	-0.2
2,774,851	+		PP_5521	0.51	-0.6
2,774,851	+		PP_5521	0.51	-0.1
2,774,874	-		PP_5521	0.53	-0.0