Strain Fitness in Pseudomonas putida KT2440 around PP_2049

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,330,538	+		PP_2048	0.50	-0.5
2,330,539	-		PP_2048	0.50	+0.1
2,330,719	+		PP_2048	0.60	-0.0
2,330,809	-		PP_2048	0.65	+0.2
2,330,869	+		PP_2048	0.69	-0.3
2,330,869	+		PP_2048	0.69	+0.1
2,330,870	-		PP_2048	0.69	-0.3
2,330,870	-		PP_2048	0.69	+0.3
2,330,884	+		PP_2048	0.70	+0.6
2,330,942	-		PP_2048	0.73	-0.0
2,330,961	-		PP_2048	0.74	-0.6
2,330,961	-		PP_2048	0.74	+0.8
2,330,978	+		PP_2048	0.75	+0.4
2,330,979	-		PP_2048	0.75	-0.8
2,331,199	+		PP_2048	0.87	-0.6
2,331,208	+		PP_2048	0.88	-0.0
2,331,292	+				-0.0
2,331,323	-				+0.2
2,331,422	-				-0.1
2,331,564	+				-1.2
2,331,715	-		PP_2049	0.22	-0.3
2,331,824	-		PP_2049	0.32	+1.0
2,331,886	-		PP_2049	0.37	+0.2
2,332,066	+		PP_2049	0.52	-0.6
2,332,066	+		PP_2049	0.52	+0.3
2,332,066	+		PP_2049	0.52	+0.5
2,332,069	-		PP_2049	0.53	+0.2
2,332,069	-		PP_2049	0.53	+0.2
2,332,069	-		PP_2049	0.53	-0.5
2,332,261	+		PP_2049	0.69	-0.7
2,332,360	+				+0.5
2,332,360	+		PP_2049	0.78	-3.3
2,332,603	+				-0.4
2,332,604	-				+0.7
2,332,604	-				+0.6
2,332,604	-				+0.1
2,332,604	-				+0.5
2,332,604	-				+1.3
2,332,615	+				-1.0
2,332,615	+				+0.6
2,332,615	+				-0.1
2,332,647	+				-0.7
2,332,648	-				-0.1
2,332,695	+		PP_2050	0.17	+0.3
2,332,696	-		PP_2050	0.17	-1.0
2,332,719	+		PP_2050	0.22	-1.7
2,332,719	+				+0.3
2,332,719	+		PP_2050	0.22	+0.2
2,332,720	-		PP_2050	0.22	+0.4
2,332,723	-		PP_2050	0.23	+0.6
2,332,723	-		PP_2050	0.23	+0.4
2,332,969	+		PP_2050	0.77	+0.0
2,332,969	+		PP_2050	0.77	-0.3
2,332,969	+		PP_2050	0.77	-0.4
2,332,969	+		PP_2050	0.77	-0.2
2,332,970	-		PP_2050	0.77	-0.2
2,333,185	-				+0.6
2,333,471	+		PP_2051	0.34	+0.3
2,333,471	+		PP_2051	0.34	-1.8
2,333,471	+		PP_2051	0.34	-0.5
2,333,472	-		PP_2051	0.34	+0.3
2,333,472	-		PP_2051	0.34	+0.6
2,333,472	-		PP_2051	0.34	-0.0
2,333,485	-		PP_2051	0.35	-2.3
2,333,507	+		PP_2051	0.37	+0.1
2,333,507	+		PP_2051	0.37	-2.2
2,333,507	+		PP_2051	0.37	+0.4
2,333,507	+		PP_2051	0.37	-0.5
2,333,507	+		PP_2051	0.37	-0.1
2,333,507	+		PP_2051	0.37	-1.3
2,333,508	-		PP_2051	0.37	-0.6
2,333,508	-		PP_2051	0.37	+0.0
2,333,508	-		PP_2051	0.37	-0.5
2,333,508	-		PP_2051	0.37	-0.6
2,333,508	-		PP_2051	0.37	-0.7
2,333,557	-		PP_2051	0.41	+0.3
2,333,579	+		PP_2051	0.43	+0.5
2,333,580	-		PP_2051	0.43	+0.3