Strain Fitness in Pseudomonas putida KT2440 around PP_1872

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,094,357	+		PP_1871	0.33	-0.8
2,094,357	+		PP_1871	0.33	-0.1
2,094,357	+		PP_1871	0.33	-0.1
2,094,358	-		PP_1871	0.33	-0.8
2,094,358	-		PP_1871	0.33	+0.8
2,094,360	+		PP_1871	0.34	-0.8
2,094,360	+		PP_1871	0.34	-1.3
2,094,361	-		PP_1871	0.34	-0.5
2,094,361	-		PP_1871	0.34	-0.1
2,094,361	-		PP_1871	0.34	-1.2
2,094,361	-		PP_1871	0.34	+0.5
2,094,621	+		PP_1871	0.63	-1.7
2,094,621	+		PP_1871	0.63	-0.3
2,094,634	+		PP_1871	0.64	-0.4
2,094,889	+				-0.9
2,094,889	+				-0.4
2,094,889	+				-0.3
2,094,890	-				-0.8
2,094,926	+				-1.2
2,094,927	-				-0.7
2,094,956	+				-1.5
2,094,956	+				-1.1
2,094,957	-				+0.1
2,094,957	-				+1.0
2,094,985	+				-0.4
2,094,995	+				-0.8
2,094,995	+				-0.4
2,094,996	-				+0.4
2,094,996	-				-0.8
2,094,997	+				+2.3
2,094,997	+				-2.5
2,094,997	+				-2.2
2,094,997	+				-2.2
2,094,997	+				-2.2
2,094,997	+				-3.2
2,094,998	-				-0.6
2,094,998	-				+0.8
2,094,998	-				+0.3
2,094,998	-				-0.3
2,094,998	-				+0.4
2,094,998	-				-1.1
2,094,998	-				+0.2
2,094,998	-				-0.5
2,094,999	+				-2.1
2,094,999	+				-1.4
2,094,999	+				-0.1
2,094,999	+				-0.6
2,094,999	+				-0.9
2,094,999	+				-1.1
2,094,999	+				-0.3
2,094,999	+				-0.6
2,094,999	+				+0.2
2,095,000	-				-0.3
2,095,000	-				-0.2
2,095,000	-				+0.5
2,095,000	-				+0.6
2,095,000	-				+0.2
2,095,000	-				-0.6
2,095,000	-				-1.2
2,095,000	-				-0.6
2,095,000	-				+1.0
2,095,000	-				+0.4
2,095,000	-				+0.4
2,095,000	-				+0.4
2,095,000	-				-0.3
2,095,033	+				-1.0
2,095,033	+				-1.8
2,095,034	-				+0.7
2,095,058	-				+0.2
2,095,058	-				-0.5
2,095,105	+				-0.2
2,095,106	-				+0.4
2,095,241	+				-1.1
2,095,267	+				-0.6
2,095,267	+				+0.3
2,095,389	+		PP_1872	0.10	-2.6
2,095,389	+		PP_1872	0.10	-1.7
2,095,483	+		PP_1872	0.18	-2.2
2,095,483	+		PP_1872	0.18	-3.6
2,095,484	-		PP_1872	0.18	-0.7
2,095,484	-		PP_1872	0.18	-2.2
2,095,540	+		PP_1872	0.23	-2.6
2,095,540	+		PP_1872	0.23	-2.2
2,095,541	-		PP_1872	0.23	-3.2
2,095,541	-		PP_1872	0.23	-1.3
2,095,541	-		PP_1872	0.23	-2.5
2,095,541	-		PP_1872	0.23	-0.4
2,095,691	-		PP_1872	0.35	-0.7
2,095,691	-		PP_1872	0.35	-0.6
2,095,691	-		PP_1872	0.35	-2.8
2,095,691	-		PP_1872	0.35	-1.5
2,095,691	-		PP_1872	0.35	-2.8
2,095,852	+		PP_1872	0.48	-2.6
2,096,044	+		PP_1872	0.64	-2.4
2,096,044	+		PP_1872	0.64	-2.7
2,096,185	+		PP_1872	0.76	-2.4
2,096,185	+		PP_1872	0.76	-1.2
2,096,186	-		PP_1872	0.76	-3.4
2,096,186	-		PP_1872	0.76	-0.3
2,096,186	-		PP_1872	0.76	-1.6
2,096,186	-		PP_1872	0.76	-2.2
2,096,213	+		PP_1872	0.78	-0.3
2,096,214	-		PP_1872	0.78	-0.0
2,096,278	+		PP_1872	0.83	-3.0
2,096,279	-				+1.3
2,096,319	+		PP_1872	0.87	-2.3
2,096,437	+				-2.1
2,096,437	+				-1.6
2,096,437	+				-2.8
2,096,438	-				-2.8
2,096,505	+				-2.7
2,096,505	+				-2.7
2,096,576	+				-2.4
2,096,576	+				-2.1
2,096,576	+				-2.5
2,096,577	-				-1.6
2,096,577	-				+1.0
2,096,579	+				-2.8
2,096,579	+				-1.8
2,096,579	+				-2.5
2,096,579	+				-2.6
2,096,579	+				-2.4
2,096,580	-				-1.2
2,096,580	-				+0.4
2,096,580	-				-0.7
2,096,581	+				-0.5
2,096,581	+				-2.3
2,096,581	+				-0.7
2,096,581	+				-2.5
2,096,581	+				-1.1
2,096,581	+				-2.9
2,096,581	+				-2.1
2,096,582	-				-0.3
2,096,582	-				+1.0
2,096,582	-				-0.9
2,096,582	-				+0.1
2,096,582	-				-0.1
2,096,582	-				-1.0
2,096,582	-				+0.2
2,096,582	-				-0.0
2,096,582	-				-1.2
2,096,642	+				-1.1
2,096,642	+				-1.5
2,096,642	+				-0.7
2,096,642	+				-1.3
2,096,642	+				-0.8
2,096,642	+				-1.7
2,096,643	-				+0.3
2,096,643	-				-0.7
2,096,643	-				-0.3
2,096,643	-				+0.4
2,096,703	-		PP_1873	0.15	-1.1
2,096,709	+		PP_1873	0.16	-0.2
2,096,750	+		PP_1873	0.27	-0.2
2,096,750	+		PP_1873	0.27	-0.1
2,096,751	-		PP_1873	0.27	+0.5
2,096,751	-		PP_1873	0.27	-0.4
2,096,777	+		PP_1873	0.33	+0.3
2,096,777	+		PP_1873	0.33	+0.3
2,096,778	-		PP_1873	0.34	-1.9
2,096,778	-		PP_1873	0.34	-0.6
2,096,778	-		PP_1873	0.34	-0.2
2,096,856	-		PP_1873	0.53	+0.7
2,096,856	-		PP_1873	0.53	+0.1
2,097,180	+		PP_1874	0.26	-0.2
2,097,180	+		PP_1874	0.26	+0.1
2,097,180	+		PP_1874	0.26	+0.8
2,097,181	-		PP_1874	0.26	-0.3
2,097,181	-		PP_1874	0.26	+0.1
2,097,211	-		PP_1874	0.32	-0.0
2,097,233	-		PP_1874	0.37	+1.1
2,097,308	+		PP_1874	0.52	+0.0
2,097,404	+		PP_1874	0.72	+0.7