Strain Fitness in Pseudomonas putida KT2440 around PP_1484

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
1,687,635	+				+0.2
1,687,635	+				-0.6
1,687,636	-				-0.6
1,687,636	-				-0.1
1,687,636	-				+0.0
1,687,636	-				-1.8
1,687,713	+		PP_1483	0.13	+0.2
1,687,713	+		PP_1483	0.13	-0.3
1,687,714	-		PP_1483	0.13	+0.1
1,687,714	-		PP_1483	0.13	-0.1
1,687,714	-		PP_1483	0.13	-0.6
1,687,956	+		PP_1483	0.40	+0.6
1,687,956	+		PP_1483	0.40	-0.6
1,687,957	-		PP_1483	0.40	+0.9
1,687,957	-		PP_1483	0.40	-1.0
1,688,112	+		PP_1483	0.57	-0.4
1,688,113	-		PP_1483	0.57	-0.9
1,688,127	+		PP_1483	0.59	-1.7
1,688,127	+		PP_1483	0.59	-0.7
1,688,127	+		PP_1483	0.59	+0.3
1,688,128	-		PP_1483	0.59	+0.4
1,688,128	-		PP_1483	0.59	+0.6
1,688,128	-		PP_1483	0.59	-0.6
1,688,160	+		PP_1483	0.62	-0.1
1,688,202	+		PP_1483	0.67	-1.5
1,688,202	+		PP_1483	0.67	+0.4
1,688,202	+		PP_1483	0.67	+1.2
1,688,202	+		PP_1483	0.67	+0.6
1,688,202	+		PP_1483	0.67	-0.6
1,688,202	+		PP_1483	0.67	-0.5
1,688,203	-		PP_1483	0.67	+0.0
1,688,205	+		PP_1483	0.67	-0.5
1,688,362	+		PP_1483	0.84	+0.8
1,688,363	-		PP_1483	0.85	-0.6
1,688,364	+		PP_1483	0.85	-0.7
1,688,364	+		PP_1483	0.85	+0.5
1,688,364	+		PP_1483	0.85	+0.3
1,688,364	+		PP_1483	0.85	+1.3
1,688,364	+		PP_1483	0.85	-0.5
1,688,364	+		PP_1483	0.85	+0.6
1,688,365	-		PP_1483	0.85	+1.0
1,688,365	-		PP_1483	0.85	-1.1
1,688,365	-		PP_1483	0.85	-0.2
1,688,365	-		PP_1483	0.85	-0.3
1,688,403	+		PP_1483	0.89	-0.8
1,688,659	+		PP_1484	0.15	-1.3
1,688,680	+		PP_1484	0.17	-1.4
1,688,681	-		PP_1484	0.17	+0.6
1,688,712	+		PP_1484	0.20	-1.8
1,688,713	-		PP_1484	0.20	+0.6
1,688,713	-		PP_1484	0.20	-0.1
1,688,713	-		PP_1484	0.20	-0.7
1,688,713	-		PP_1484	0.20	-0.7
1,688,869	+		PP_1484	0.35	+1.0
1,688,870	-		PP_1484	0.35	+0.9
1,688,870	-		PP_1484	0.35	+0.5
1,688,870	-		PP_1484	0.35	+0.9
1,688,870	-		PP_1484	0.35	+1.4
1,688,870	-		PP_1484	0.35	+0.6
1,689,158	-		PP_1484	0.63	-0.2
1,689,229	-		PP_1484	0.70	+0.5
1,689,241	+		PP_1484	0.71	+0.3
1,689,283	+		PP_1484	0.75	-0.8
1,689,283	+		PP_1484	0.75	+0.9
1,689,283	+		PP_1484	0.75	-0.8
1,689,284	-		PP_1484	0.75	-1.7
1,689,284	-		PP_1484	0.75	+0.6
1,689,599	-				-0.2
1,689,710	+				-1.3
1,689,710	+				+0.2
1,689,711	-				-0.1
1,689,711	-				-1.9
1,689,711	-				+0.8
1,689,731	+				-0.6
1,689,932	+		PP_1486	0.22	-1.3
1,689,933	-		PP_1486	0.22	+0.8
1,690,055	+		PP_1486	0.32	+0.4
1,690,178	+		PP_1486	0.43	+0.9
1,690,178	+		PP_1486	0.43	-0.1
1,690,178	+		PP_1486	0.43	+1.1
1,690,178	+		PP_1486	0.43	+0.1
1,690,178	+				+0.3
1,690,178	+		PP_1486	0.43	+0.1
1,690,179	-		PP_1486	0.43	-1.3
1,690,179	-		PP_1486	0.43	-0.4
1,690,179	-		PP_1486	0.43	+0.0
1,690,179	-		PP_1486	0.43	-1.5
1,690,242	-		PP_1486	0.49	+0.6
1,690,242	-		PP_1486	0.49	-0.5
1,690,262	+		PP_1486	0.50	+0.6
1,690,263	-		PP_1486	0.50	-1.1
1,690,263	-		PP_1486	0.50	+1.0
1,690,263	-		PP_1486	0.50	-0.3
1,690,263	-				-0.1
1,690,419	-		PP_1486	0.64	-0.8
1,690,439	+		PP_1486	0.66	-1.8
1,690,440	-		PP_1486	0.66	+0.9
1,690,440	-		PP_1486	0.66	+0.5
1,690,440	-		PP_1486	0.66	-0.8
1,690,446	+		PP_1486	0.66	-0.1
1,690,446	+		PP_1486	0.66	-1.3
1,690,446	+		PP_1486	0.66	+0.3
1,690,447	-		PP_1486	0.66	-0.9
1,690,510	+		PP_1486	0.72	+1.2