Strain Fitness in Pseudomonas putida KT2440 around PP_1402

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
1,596,231	+		PP_1401	0.42	-0.1
1,596,231	+		PP_1401	0.42	+0.0
1,596,310	+		PP_1401	0.47	+0.1
1,596,310	+				+0.6
1,596,311	-		PP_1401	0.48	-0.3
1,596,413	+		PP_1401	0.55	+0.2
1,596,414	-		PP_1401	0.55	-0.1
1,596,718	+		PP_1401	0.78	+0.1
1,596,719	-		PP_1401	0.78	-0.1
1,596,719	-		PP_1401	0.78	+0.7
1,596,754	-		PP_1401	0.81	-0.5
1,596,754	-		PP_1401	0.81	-0.8
1,596,754	-		PP_1401	0.81	+1.1
1,596,971	+				-0.2
1,596,974	+				-1.1
1,596,975	-				-0.6
1,596,975	-				+0.4
1,596,975	-				-0.1
1,596,975	-				+0.1
1,596,975	-				-0.7
1,597,010	+				+0.8
1,597,010	+				-0.4
1,597,011	-				+0.7
1,597,011	-				+0.3
1,597,011	-				-1.0
1,597,011	-				-1.3
1,597,232	+		PP_1402	0.13	-0.0
1,597,232	+		PP_1402	0.13	-0.2
1,597,232	+		PP_1402	0.13	+0.3
1,597,233	-		PP_1402	0.13	-0.6
1,597,233	-		PP_1402	0.13	+0.5
1,597,272	+		PP_1402	0.15	-1.4
1,597,272	+		PP_1402	0.15	-0.2
1,597,316	+		PP_1402	0.18	-0.0
1,597,374	+		PP_1402	0.21	+1.0
1,597,375	-		PP_1402	0.21	-1.5
1,597,615	+		PP_1402	0.35	-0.1
1,597,615	+		PP_1402	0.35	+0.3
1,597,615	+		PP_1402	0.35	-1.5
1,597,615	+		PP_1402	0.35	-0.5
1,597,616	-		PP_1402	0.35	-0.7
1,597,616	-		PP_1402	0.35	+0.2
1,597,864	+		PP_1402	0.49	+0.5
1,597,947	+		PP_1402	0.54	-0.1
1,597,948	-		PP_1402	0.54	+0.3
1,597,954	+		PP_1402	0.54	-0.1
1,597,955	-		PP_1402	0.54	+0.1
1,597,955	-		PP_1402	0.54	-0.7
1,597,958	-		PP_1402	0.54	-0.4
1,597,958	-		PP_1402	0.54	+0.5
1,598,025	-		PP_1402	0.58	-0.1
1,598,025	-		PP_1402	0.58	-0.9
1,598,025	-		PP_1402	0.58	+0.3
1,598,171	-		PP_1402	0.66	-0.4
1,598,310	+		PP_1402	0.74	-0.3
1,598,365	-		PP_1402	0.77	+0.7
1,598,379	+		PP_1402	0.78	+0.3
1,598,379	+		PP_1402	0.78	+0.0
1,598,379	+		PP_1402	0.78	-1.8
1,598,822	-				-0.7
1,598,822	-				+1.0
1,598,827	+				-0.4
1,598,828	-				+0.7
1,598,844	-				-0.2
1,598,941	-				-0.1
1,598,992	+				+0.8
1,598,992	+				-0.4
1,598,992	+				+0.2
1,599,121	+				+0.8
1,599,122	-		PP_1403	0.10	+0.5
1,599,122	-		PP_1403	0.10	-1.4
1,599,172	-		PP_1403	0.12	+0.2
1,599,247	+		PP_1403	0.15	+1.6
1,599,247	+		PP_1403	0.15	-0.0
1,599,248	-		PP_1403	0.16	-0.9
1,599,248	-		PP_1403	0.16	+0.4
1,599,248	-		PP_1403	0.16	+0.1
1,599,299	-		PP_1403	0.18	+0.8
1,599,299	-		PP_1403	0.18	+0.1
1,599,311	-		PP_1403	0.18	-0.8
1,599,311	-		PP_1403	0.18	-0.7
1,599,311	-		PP_1403	0.18	-1.1
1,599,311	-		PP_1403	0.18	-0.0
1,599,311	-		PP_1403	0.18	+0.2
1,599,361	+		PP_1403	0.20	-0.8
1,599,361	+		PP_1403	0.20	+0.2
1,599,361	+		PP_1403	0.20	-1.5
1,599,361	+		PP_1403	0.20	-0.3
1,599,362	-		PP_1403	0.21	+0.1
1,599,362	-		PP_1403	0.21	-0.3
1,599,364	+		PP_1403	0.21	+0.7
1,599,365	-		PP_1403	0.21	-0.5
1,599,398	+		PP_1403	0.22	+1.4
1,599,398	+		PP_1403	0.22	-0.7
1,599,398	+		PP_1403	0.22	-0.3
1,599,424	+		PP_1403	0.23	+0.2
1,599,425	-		PP_1403	0.23	-0.5
1,599,425	-		PP_1403	0.23	+0.5
1,599,699	+		PP_1403	0.35	-1.0