Strain Fitness in Pseudomonas putida KT2440 around PP_0967

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
1,105,863	+		PP_0966	0.26	+1.2
1,105,926	+		PP_0966	0.31	-0.1
1,105,927	-		PP_0966	0.31	+0.6
1,105,927	-		PP_0966	0.31	+2.2
1,105,927	-		PP_0966	0.31	-0.6
1,105,927	-		PP_0966	0.31	+1.2
1,105,951	-		PP_0966	0.32	+2.2
1,106,184	+		PP_0966	0.50	+1.2
1,106,184	+		PP_0966	0.50	-1.1
1,106,184	+		PP_0966	0.50	+1.2
1,106,184	+		PP_0966	0.50	+0.6
1,106,184	+		PP_0966	0.50	+1.2
1,106,185	-		PP_0966	0.50	+1.2
1,106,185	-		PP_0966	0.50	+2.2
1,106,185	-		PP_0966	0.50	+1.2
1,106,185	-		PP_0966	0.50	+2.2
1,106,185	-		PP_0966	0.50	+0.2
1,106,185	-		PP_0966	0.50	-0.1
1,106,221	+		PP_0966	0.53	-0.4
1,106,222	-		PP_0966	0.53	+0.2
1,106,222	-		PP_0966	0.53	-0.1
1,106,426	+		PP_0966	0.68	-0.1
1,106,691	+		PP_0966	0.88	+1.2
1,106,691	+		PP_0966	0.88	+2.2
1,106,691	+		PP_0966	0.88	-0.1
1,106,691	+		PP_0966	0.88	+2.2
1,106,692	-		PP_0966	0.88	-0.4
1,106,692	-		PP_0966	0.88	+1.2
1,106,692	-		PP_0966	0.88	-0.4
1,106,692	-		PP_0966	0.88	+2.2
1,106,692	-		PP_0966	0.88	+0.2
1,106,814	+				-0.1
1,106,815	-				-0.6
1,106,819	+				-0.2
1,106,819	+				+1.1
1,106,891	+				+2.2
1,106,891	+				+2.2
1,106,891	+				-0.4
1,106,891	+				+1.2
1,106,892	-				+0.6
1,106,892	-				+0.2
1,107,018	-		PP_0967	0.16	+2.2
1,107,018	-		PP_0967	0.16	+0.2
1,107,063	-		PP_0967	0.20	-0.6
1,107,180	-		PP_0967	0.32	+0.2
1,107,188	+		PP_0967	0.32	+0.6
1,107,189	-		PP_0967	0.32	+2.2
1,107,197	+		PP_0967	0.33	+0.6
1,107,198	-		PP_0967	0.33	+0.2
1,107,198	-				+2.2
1,107,198	-		PP_0967	0.33	+0.6
1,107,270	-		PP_0967	0.40	+0.6
1,107,398	+		PP_0967	0.52	-1.0
1,107,398	+		PP_0967	0.52	-0.1
1,107,398	+		PP_0967	0.52	-0.1
1,107,399	-		PP_0967	0.53	+1.2
1,107,399	-		PP_0967	0.53	+2.2
1,107,498	+		PP_0967	0.62	+0.6
1,107,498	+		PP_0967	0.62	+0.6
1,107,592	+		PP_0967	0.71	-1.1
1,107,593	-		PP_0967	0.71	+1.2
1,107,629	+		PP_0967	0.74	+1.2
1,107,629	+		PP_0967	0.74	+0.6
1,107,654	+		PP_0967	0.77	+0.2
1,107,654	+		PP_0967	0.77	+0.6
1,107,654	+		PP_0967	0.77	+0.2
1,107,657	+		PP_0967	0.77	-0.1
1,107,657	+		PP_0967	0.77	+0.2
1,107,658	-		PP_0967	0.77	-0.4
1,107,844	+				+0.6
1,107,845	-				+1.2
1,107,900	+				+0.2
1,107,900	+				-0.0
1,107,900	+				-0.8
1,107,901	-				-0.5
1,107,901	-				+0.0
1,107,901	-				+0.8
1,107,922	+				-0.5
1,108,000	+				-1.2
1,108,015	+				-0.1
1,108,032	+				-0.2
1,108,033	-				-0.5
1,108,076	+				-0.9
1,108,077	-				-1.3
1,108,181	+		PP_0968	0.14	-0.0
1,108,182	-		PP_0968	0.14	+0.6
1,108,193	-		PP_0968	0.15	+0.2
1,108,290	+		PP_0968	0.22	-0.6
1,108,291	-		PP_0968	0.23	-1.2
1,108,495	+		PP_0968	0.39	-0.2
1,108,514	+		PP_0968	0.40	-0.9
1,108,514	+		PP_0968	0.40	+0.8
1,108,515	-		PP_0968	0.41	-0.7
1,108,524	+		PP_0968	0.41	+0.5
1,108,525	-		PP_0968	0.41	+0.3
1,108,525	-		PP_0968	0.41	+0.1
1,108,566	+		PP_0968	0.45	-0.7
1,108,567	-		PP_0968	0.45	+0.2
1,108,567	-		PP_0968	0.45	+0.3
1,108,567	-		PP_0968	0.45	+0.1
1,108,621	+		PP_0968	0.49	-1.0
1,108,621	+		PP_0968	0.49	-0.4
1,108,633	+		PP_0968	0.50	+0.2
1,108,634	-		PP_0968	0.50	+0.8
1,108,758	+		PP_0968	0.60	-0.0
1,108,831	+		PP_0968	0.66	-1.2
1,108,831	+		PP_0968	0.66	+0.0
1,108,831	+		PP_0968	0.66	-1.3
1,108,832	-		PP_0968	0.66	+0.3
1,108,843	+		PP_0968	0.67	+0.4