Strain Fitness in Pseudomonas putida KT2440 around PP_0887

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
1,028,949	+				+0.1
1,028,950	-				+0.1
1,028,950	-				-0.1
1,028,966	-				+0.4
1,028,978	-				+0.2
1,029,004	+				+0.4
1,029,029	-				+0.1
1,029,122	-				-0.7
1,029,185	+				+0.0
1,029,299	-		PP_0886	0.25	-1.0
1,029,299	-		PP_0886	0.25	-0.9
1,029,455	+		PP_0886	0.47	+0.2
1,029,679	+		PP_0886	0.78	-0.4
1,029,680	-		PP_0886	0.78	+0.1
1,029,841	+				-0.8
1,029,841	+				-0.7
1,029,842	-				+0.0
1,029,842	-				-0.4
1,029,896	+				-1.3
1,029,896	+				-1.1
1,029,897	-				-0.0
1,029,913	+				+0.1
1,029,914	-				-0.2
1,029,998	+				+0.1
1,029,998	+				-1.3
1,029,999	-				+1.2
1,029,999	-				+0.6
1,030,147	+		PP_0887	0.15	+0.3
1,030,318	+		PP_0887	0.28	-0.4
1,030,318	+		PP_0887	0.28	-0.5
1,030,318	+		PP_0887	0.28	-0.8
1,030,318	+		PP_0887	0.28	-1.4
1,030,318	+		PP_0887	0.28	-0.1
1,030,319	-		PP_0887	0.28	-0.7
1,030,319	-		PP_0887	0.28	+0.2
1,030,319	-		PP_0887	0.28	-0.8
1,030,319	-		PP_0887	0.28	-0.4
1,030,319	-		PP_0887	0.28	+0.9
1,030,354	+		PP_0887	0.30	-2.0
1,030,354	+		PP_0887	0.30	-1.1
1,030,355	-		PP_0887	0.30	-0.0
1,030,357	+		PP_0887	0.31	+0.0
1,030,357	+		PP_0887	0.31	-0.9
1,030,358	-		PP_0887	0.31	-0.1
1,030,358	-		PP_0887	0.31	+0.2
1,030,439	-		PP_0887	0.37	-1.4
1,030,507	+		PP_0887	0.42	+0.3
1,030,507	+		PP_0887	0.42	-1.0
1,030,508	-		PP_0887	0.42	+0.4
1,030,785	-		PP_0887	0.62	+0.5
1,030,785	-		PP_0887	0.62	+0.1
1,030,785	-		PP_0887	0.62	+0.2
1,030,925	-		PP_0887	0.73	-0.6
1,030,995	-		PP_0887	0.78	+1.2
1,031,083	-		PP_0887	0.84	+0.2
1,031,142	+		PP_0887	0.89	-0.6
1,031,142	+		PP_0887	0.89	-1.9
1,031,142	+		PP_0887	0.89	-0.7
1,031,142	+		PP_0887	0.89	-1.5
1,031,142	+		PP_0887	0.89	-0.2
1,031,143	-		PP_0887	0.89	+0.6
1,031,145	+		PP_0887	0.89	-1.1
1,031,145	+		PP_0887	0.89	-0.0
1,031,146	-		PP_0887	0.89	+0.2
1,031,227	+				+0.2
1,031,228	-				+2.2
1,031,228	-				-1.1
1,031,228	-				+1.2
1,031,229	+				+0.2
1,031,229	+				+0.8
1,031,229	+				+0.6
1,031,273	-				+1.2
1,031,273	-				+1.2
1,031,470	-		PP_0888	0.31	-0.6
1,031,622	+		PP_0888	0.58	+0.8
1,031,622	+		PP_0888	0.58	-0.1
1,031,623	-		PP_0888	0.58	+0.6
1,031,774	+		PP_0888	0.85	+2.2
1,031,775	-		PP_0888	0.86	-1.1
1,031,971	+				-0.4
1,031,971	+				-0.2
1,031,972	-				-1.9
1,031,972	-				+2.5
1,031,972	-				+1.2
1,032,158	+		PP_0889	0.22	+0.2
1,032,159	-		PP_0889	0.22	+0.6
1,032,159	-		PP_0889	0.22	+0.8
1,032,175	-		PP_0889	0.24	+0.0
1,032,221	-		PP_0889	0.28	-0.9
1,032,233	-		PP_0889	0.29	+1.2