Experiment: L-tyrosine 5 mM (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0628 and PP_5447 are separated by 55 nucleotides PP_5447 and PP_0629 are separated by 86 nucleotides PP_0629 and PP_0630 are separated by 111 nucleotides PP_0630 and PP_0631 overlap by 4 nucleotides PP_0631 and PP_0632 overlap by 1 nucleotides
PP_0628: PP_0628 - conserved protein of unknown function, at 735,707 to 736,336
_0628
PP_5447: PP_5447 - conserved membrane protein of unknown function, at 736,392 to 736,823
_5447
PP_0629: PP_0629 - conserved membrane protein of unknown function, at 736,910 to 737,617
_0629
PP_0630: PP_0630 - DNA gyrase inhibitor YacG, at 737,729 to 737,929
_0630
PP_0631: PP_0631 - Dephospho-CoA kinase, at 737,926 to 738,549
_0631
PP_0632: PP_0632 - leader peptidase/N-methyltransferase, at 738,549 to 739,415
_0632
Position (kb) 736
737
738 Strain fitness (log2 ratio) -2
-1
0
1 at 736.204 kb on - strand, within PP_0628 at 736.261 kb on + strand, within PP_0628 at 736.262 kb on - strand, within PP_0628 at 736.306 kb on + strand at 736.307 kb on - strand at 736.307 kb on - strand at 736.320 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.368 kb on + strand at 736.369 kb on - strand at 736.475 kb on + strand, within PP_5447 at 736.475 kb on + strand, within PP_5447 at 736.509 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.537 kb on + strand, within PP_5447 at 736.538 kb on - strand, within PP_5447 at 736.538 kb on - strand, within PP_5447 at 736.613 kb on - strand, within PP_5447 at 736.724 kb on - strand, within PP_5447 at 736.761 kb on + strand, within PP_5447 at 736.761 kb on + strand, within PP_5447 at 736.794 kb on + strand at 736.892 kb on - strand at 736.892 kb on - strand at 736.903 kb on + strand at 736.903 kb on + strand at 736.925 kb on - strand at 736.925 kb on - strand at 736.988 kb on + strand, within PP_0629 at 736.989 kb on - strand, within PP_0629 at 737.135 kb on + strand, within PP_0629 at 737.144 kb on - strand, within PP_0629 at 737.297 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.314 kb on - strand, within PP_0629 at 737.354 kb on - strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.526 kb on + strand, within PP_0629 at 737.582 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.714 kb on + strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.715 kb on - strand at 737.757 kb on + strand, within PP_0630 at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.572 kb on - strand at 738.581 kb on - strand at 738.583 kb on - strand at 738.583 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction L-tyrosine 5 mM (C) remove 736,204 - PP_0628 0.79 +0.3 736,261 + PP_0628 0.88 +0.6 736,262 - PP_0628 0.88 +0.6 736,306 + +0.6 736,307 - +0.4 736,307 - +0.2 736,320 + +0.4 736,368 + +0.7 736,368 + -0.1 736,368 + +0.4 736,368 + -0.2 736,368 + +0.0 736,368 + -0.6 736,368 + +0.6 736,368 + -0.3 736,369 - +1.4 736,475 + PP_5447 0.19 +0.3 736,475 + PP_5447 0.19 -0.6 736,509 + PP_5447 0.27 -0.4 736,537 + PP_5447 0.34 -0.9 736,537 + PP_5447 0.34 -0.9 736,537 + PP_5447 0.34 -0.1 736,538 - PP_5447 0.34 +0.4 736,538 - PP_5447 0.34 -0.6 736,613 - PP_5447 0.51 +0.4 736,724 - PP_5447 0.77 -1.9 736,761 + PP_5447 0.85 -0.0 736,761 + PP_5447 0.85 -0.5 736,794 + +0.5 736,892 - +0.4 736,892 - +0.2 736,903 + -0.2 736,903 + -0.7 736,925 - +0.5 736,925 - -1.6 736,988 + PP_0629 0.11 -0.9 736,989 - PP_0629 0.11 -0.3 737,135 + PP_0629 0.32 -1.3 737,144 - PP_0629 0.33 -1.0 737,297 - PP_0629 0.55 -0.4 737,314 - PP_0629 0.57 -0.8 737,314 - PP_0629 0.57 -0.9 737,354 - PP_0629 0.63 +0.6 737,526 + PP_0629 0.87 -1.7 737,526 + PP_0629 0.87 +0.3 737,526 + PP_0629 0.87 -0.3 737,582 + -0.2 737,714 + +1.2 737,714 + +0.6 737,714 + -0.5 737,714 + +1.6 737,715 - -1.9 737,715 - +0.4 737,715 - -0.7 737,757 + PP_0630 0.14 -0.1 738,572 - +0.4 738,572 - -0.5 738,572 - -0.0 738,572 - -0.1 738,581 - -1.5 738,583 - -0.6 738,583 - +0.4
Or see this region's nucleotide sequence