Strain Fitness in Pseudomonas putida KT2440 around PP_0568

Experiment: L-tyrosine 5 mM (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0567 and PP_0568 are separated by 166 nucleotidesPP_0568 and PP_0569 are separated by 126 nucleotides PP_0567: PP_0567 - Biosynthetic arginine decarboxylase, at 658,955 to 660,868 _0567 PP_0568: PP_0568 - conserved protein of unknown function, at 661,035 to 661,490 _0568 PP_0569: PP_0569 - MATE efflux family protein, at 661,617 to 662,954 _0569 Position (kb) 661 662Strain fitness (log2 ratio) -2 -1 0 1 2 3at 660.060 kb on + strand, within PP_0567at 660.061 kb on - strand, within PP_0567at 660.155 kb on + strand, within PP_0567at 660.155 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.173 kb on + strand, within PP_0567at 660.174 kb on - strand, within PP_0567at 660.174 kb on - strand, within PP_0567at 660.248 kb on + strand, within PP_0567at 660.248 kb on + strand, within PP_0567at 660.249 kb on - strand, within PP_0567at 660.249 kb on - strand, within PP_0567at 660.249 kb on - strand, within PP_0567at 660.348 kb on - strand, within PP_0567at 660.348 kb on - strand, within PP_0567at 660.348 kb on - strand, within PP_0567at 660.504 kb on - strand, within PP_0567at 660.504 kb on - strand, within PP_0567at 660.566 kb on + strand, within PP_0567at 660.566 kb on + strand, within PP_0567at 660.597 kb on - strand, within PP_0567at 660.597 kb on - strand, within PP_0567at 660.657 kb on - strand, within PP_0567at 660.728 kb on + strandat 660.728 kb on + strandat 660.728 kb on + strandat 660.815 kb on + strandat 660.815 kb on + strandat 660.816 kb on - strandat 660.854 kb on + strandat 660.854 kb on + strandat 660.854 kb on + strandat 660.855 kb on - strandat 660.855 kb on - strandat 660.855 kb on - strandat 660.932 kb on - strandat 660.966 kb on + strandat 660.970 kb on + strandat 661.003 kb on - strandat 661.034 kb on + strandat 661.060 kb on + strandat 661.096 kb on - strand, within PP_0568at 661.247 kb on + strand, within PP_0568at 661.317 kb on + strand, within PP_0568at 661.317 kb on + strand, within PP_0568at 661.318 kb on - strand, within PP_0568at 661.318 kb on - strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.343 kb on + strand, within PP_0568at 661.344 kb on - strand, within PP_0568at 661.344 kb on - strand, within PP_0568at 661.410 kb on + strand, within PP_0568at 661.410 kb on + strand, within PP_0568at 661.411 kb on - strand, within PP_0568at 661.461 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.480 kb on + strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.481 kb on - strandat 661.834 kb on + strand, within PP_0569at 661.886 kb on - strand, within PP_0569at 661.886 kb on - strand, within PP_0569at 661.886 kb on - strand, within PP_0569at 662.092 kb on + strand, within PP_0569at 662.092 kb on + strand, within PP_0569at 662.093 kb on - strand, within PP_0569at 662.093 kb on - strand, within PP_0569at 662.093 kb on - strand, within PP_0569at 662.172 kb on - strand, within PP_0569at 662.204 kb on + strand, within PP_0569at 662.291 kb on - strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.406 kb on + strand, within PP_0569at 662.407 kb on - strand, within PP_0569at 662.407 kb on - strand, within PP_0569

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Per-strain Table

Position Strand Gene LocusTag Fraction L-tyrosine 5 mM (C)
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660,060 + PP_0567 0.58 -0.2
660,061 - PP_0567 0.58 +1.0
660,155 + PP_0567 0.63 +1.4
660,155 + PP_0567 0.63 -0.6
660,173 + PP_0567 0.64 -0.3
660,173 + PP_0567 0.64 -1.7
660,173 + PP_0567 0.64 -0.8
660,173 + PP_0567 0.64 -1.0
660,173 + PP_0567 0.64 -0.3
660,174 - PP_0567 0.64 -0.6
660,174 - PP_0567 0.64 +1.3
660,248 + PP_0567 0.68 +0.7
660,248 + PP_0567 0.68 -0.1
660,249 - PP_0567 0.68 +0.8
660,249 - PP_0567 0.68 +0.3
660,249 - PP_0567 0.68 +0.3
660,348 - PP_0567 0.73 -0.3
660,348 - PP_0567 0.73 -0.3
660,348 - PP_0567 0.73 -0.5
660,504 - PP_0567 0.81 +0.1
660,504 - PP_0567 0.81 -0.9
660,566 + PP_0567 0.84 +0.8
660,566 + PP_0567 0.84 -0.5
660,597 - PP_0567 0.86 -0.3
660,597 - PP_0567 0.86 -0.4
660,657 - PP_0567 0.89 -1.2
660,728 + -1.3
660,728 + -0.9
660,728 + -0.2
660,815 + -0.7
660,815 + -0.1
660,816 - +0.4
660,854 + -0.4
660,854 + -0.3
660,854 + +3.2
660,855 - +0.8
660,855 - +0.1
660,855 - +0.5
660,932 - +0.1
660,966 + -0.9
660,970 + +0.2
661,003 - -0.6
661,034 + +0.1
661,060 + -0.5
661,096 - PP_0568 0.13 -1.1
661,247 + PP_0568 0.46 +0.8
661,317 + PP_0568 0.62 -0.2
661,317 + PP_0568 0.62 +0.7
661,318 - PP_0568 0.62 -0.8
661,318 - PP_0568 0.62 +0.6
661,343 + PP_0568 0.68 -1.8
661,343 + PP_0568 0.68 +1.0
661,343 + PP_0568 0.68 +0.6
661,343 + PP_0568 0.68 -0.2
661,344 - PP_0568 0.68 -0.8
661,344 - PP_0568 0.68 +0.4
661,410 + PP_0568 0.82 -0.4
661,410 + PP_0568 0.82 -0.7
661,411 - PP_0568 0.82 -1.3
661,461 + -0.2
661,480 + -0.8
661,480 + -0.4
661,480 + +0.0
661,480 + -1.1
661,481 - -0.7
661,481 - -0.5
661,481 - -0.4
661,481 - -0.8
661,481 - -0.4
661,834 + PP_0569 0.16 -0.4
661,886 - PP_0569 0.20 +0.0
661,886 - PP_0569 0.20 -1.1
661,886 - PP_0569 0.20 -0.5
662,092 + PP_0569 0.36 -0.0
662,092 + PP_0569 0.36 -1.0
662,093 - PP_0569 0.36 +2.7
662,093 - PP_0569 0.36 -1.2
662,093 - PP_0569 0.36 -0.1
662,172 - PP_0569 0.41 -0.4
662,204 + PP_0569 0.44 -0.3
662,291 - PP_0569 0.50 -0.8
662,406 + PP_0569 0.59 -1.4
662,406 + PP_0569 0.59 +0.3
662,406 + PP_0569 0.59 +0.1
662,407 - PP_0569 0.59 -0.8
662,407 - PP_0569 0.59 -0.2

Or see this region's nucleotide sequence