Strain Fitness in Pseudomonas putida KT2440 around PP_5077

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
5,797,334	+		PP_5076	0.87	-2.0
5,797,334	+		PP_5076	0.87	-1.6
5,797,335	-		PP_5076	0.87	-2.4
5,797,367	+		PP_5076	0.88	-0.6
5,797,367	+		PP_5076	0.88	-2.0
5,797,367	+		PP_5076	0.88	-0.6
5,797,368	-		PP_5076	0.88	-2.0
5,797,368	-		PP_5076	0.88	-1.3
5,797,368	-		PP_5076	0.88	-2.4
5,797,368	-		PP_5076	0.88	+0.5
5,797,646	+				-0.5
5,797,646	+				-0.5
5,797,646	+				-1.1
5,797,646	+				-0.6
5,797,647	-				-0.1
5,797,833	+				-1.5
5,797,834	-				+0.3
5,797,834	-				-0.6
5,797,883	+				-0.6
5,797,884	-				-1.3
5,797,937	-				+0.7
5,797,937	-				+0.1
5,797,960	+				-0.8
5,797,960	+				-2.0
5,798,153	+				-0.5
5,798,153	+				-0.4
5,798,153	+				-1.1
5,798,153	+				-2.3
5,798,153	+				+0.3
5,798,153	+				+0.6
5,798,153	+				-0.6
5,798,153	+				-0.3
5,798,153	+				-0.4
5,798,154	-				+0.8
5,798,154	-				+0.9
5,798,154	-				+0.5
5,798,213	+				+0.0
5,798,224	+				-0.6
5,798,235	+				+0.1
5,798,235	+				-0.3
5,798,236	-				-0.2
5,798,239	+				+0.3
5,798,239	+				-0.6
5,798,240	-				+2.7
5,798,240	-				-1.7
5,798,271	+				-1.1
5,798,272	-				-0.4
5,798,315	-				-1.0
5,798,315	-				+0.6
5,798,315	-				-1.4
5,798,400	+				-0.4
5,798,412	+				-0.3
5,798,413	-				+0.4
5,798,413	-				-2.6
5,798,445	+		PP_5077	0.11	-0.6
5,798,445	+		PP_5077	0.11	-0.4
5,798,445	+		PP_5077	0.11	+1.4
5,798,446	-		PP_5077	0.11	-1.4
5,798,475	+		PP_5077	0.13	+0.1
5,798,476	-		PP_5077	0.13	-1.4
5,798,504	-		PP_5077	0.15	-1.5
5,798,523	+		PP_5077	0.16	-1.8
5,798,524	-		PP_5077	0.16	-1.3
5,798,524	-		PP_5077	0.16	-0.0
5,798,524	-		PP_5077	0.16	-0.4
5,798,524	-		PP_5077	0.16	-1.8
5,798,548	-		PP_5077	0.17	-2.1
5,799,297	+		PP_5077	0.64	-0.4
5,799,297	+		PP_5077	0.64	-1.6
5,799,297	+		PP_5077	0.64	+1.3
5,799,298	-		PP_5077	0.64	-0.6
5,799,480	+		PP_5077	0.76	-0.6
5,799,480	+		PP_5077	0.76	+0.1
5,799,481	-		PP_5077	0.76	-1.1
5,799,481	-		PP_5077	0.76	+0.3
5,799,481	-		PP_5077	0.76	-0.1
5,799,580	+		PP_5077	0.82	-0.6
5,799,580	+		PP_5077	0.82	-0.8
5,799,581	-		PP_5077	0.82	+0.2
5,799,718	+				-1.4
5,799,718	+				-0.5
5,799,720	+				-1.2
5,799,721	-				-0.3
5,799,788	+				-1.3
5,799,822	+				-0.5
5,799,822	+				-1.6
5,799,823	-				-1.5
5,799,823	-				+0.4