Strain Fitness in Pseudomonas putida KT2440 around PP_4615

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
5,236,941	+				+0.2
5,236,941	+				-2.6
5,236,941	+				+0.9
5,236,942	-				-1.3
5,236,942	-				-1.2
5,236,958	+				+0.3
5,236,958	+				+0.3
5,236,958	+				+0.5
5,236,958	+				-1.2
5,236,959	-				-0.9
5,236,959	-				+0.0
5,236,959	-				+0.5
5,236,965	+				+0.3
5,236,966	-				-0.7
5,237,017	+				+1.1
5,237,018	-				-0.4
5,237,088	-				-0.1
5,237,932	+				-0.8
5,237,932	+				+2.3
5,237,933	-				-2.5
5,237,992	+		PP_4615	0.13	-0.0
5,238,001	+		PP_4615	0.15	-0.0
5,238,001	+		PP_4615	0.15	-0.4
5,238,052	+		PP_4615	0.26	+0.4
5,238,052	+		PP_4615	0.26	-0.3
5,238,130	+		PP_4615	0.42	-0.4
5,238,130	+		PP_4615	0.42	+1.8
5,238,130	+		PP_4615	0.42	-0.3
5,238,130	+		PP_4615	0.42	-1.3
5,238,131	-		PP_4615	0.42	+0.4
5,238,169	+		PP_4615	0.51	-0.1
5,238,170	-		PP_4615	0.51	-0.7
5,238,170	-		PP_4615	0.51	+0.9
5,238,170	-		PP_4615	0.51	-0.0
5,238,170	-		PP_4615	0.51	-0.1
5,238,199	+		PP_4615	0.57	-0.0
5,238,199	+		PP_4615	0.57	-0.4
5,238,200	-		PP_4615	0.57	+0.0
5,238,314	-		PP_4615	0.81	-0.1
5,238,314	-		PP_4615	0.81	-1.3
5,238,419	+				+0.3
5,238,427	+				-0.5
5,238,427	+				-0.4
5,238,469	+				+0.5
5,238,619	+		PP_5701	0.64	+0.1
5,238,620	-		PP_5701	0.64	+0.7
5,238,620	-		PP_5701	0.64	-1.4
5,238,691	-				+1.3
5,238,691	-				+0.2
5,238,708	+				-0.3
5,238,709	-				-1.3
5,238,709	-				+0.0
5,238,709	-				-1.3
5,238,709	-				+1.3
5,238,709	-				+0.6
5,238,758	-				-0.4
5,238,813	+				-0.8
5,238,814	-				+0.8
5,238,814	-				-0.2
5,238,814	-				+0.3
5,238,923	+				-0.3
5,238,961	+				-0.1
5,238,961	+				-1.4
5,238,961	+				-0.3
5,238,962	-				+0.4
5,238,962	-				+0.3
5,238,992	-				+0.1
5,238,992	-				-0.1
5,239,029	+		PP_4616	0.21	-0.9
5,239,144	+		PP_4616	0.65	-0.2
5,239,144	+		PP_4616	0.65	+1.0
5,239,144	+		PP_4616	0.65	-0.3
5,239,145	-		PP_4616	0.65	-0.3
5,239,145	-		PP_4616	0.65	+0.4
5,239,145	-		PP_4616	0.65	-0.1
5,239,145	-		PP_4616	0.65	-0.1
5,239,145	-		PP_4616	0.65	-0.4
5,239,238	-				-1.4
5,239,259	+				+0.5
5,239,260	-				-0.1
5,239,302	+				+0.3
5,239,302	+				+2.3
5,239,303	-				-0.5