Strain Fitness in Pseudomonas putida KT2440 around PP_3641

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
4,135,789	+				-0.1
4,135,789	+				+0.7
4,135,789	+				-1.4
4,135,790	-				-0.5
4,135,790	-				+0.7
4,135,790	-				-0.9
4,135,790	-				+0.1
4,135,790	-				+0.2
4,135,790	-				+0.6
4,135,826	+				-0.5
4,135,826	+				-1.0
4,135,827	-				-0.8
4,135,827	-				-0.9
4,135,870	+				-0.8
4,135,871	-				-2.2
4,136,196	-		PP_3640	0.44	-0.5
4,136,320	+		PP_3640	0.57	+0.2
4,136,320	+		PP_3640	0.57	+0.1
4,136,321	-		PP_3640	0.57	-0.8
4,136,597	+		PP_3640	0.87	+0.2
4,136,597	+		PP_3640	0.87	-0.5
4,136,615	-		PP_3640	0.89	-1.8
4,136,814	+				-1.8
4,136,843	+				+0.4
4,136,844	-				-0.5
4,136,846	+				+0.1
4,136,847	-				-0.8
4,136,847	-				+0.8
4,136,847	-				+0.3
4,136,847	-				-0.7
4,136,913	-				+0.2
4,136,924	+		PP_3641	0.10	-1.5
4,136,924	+		PP_3641	0.10	-0.5
4,136,924	+		PP_3641	0.10	-1.4
4,136,925	-		PP_3641	0.10	-0.4
4,136,925	-				+2.8
4,136,935	-		PP_3641	0.11	+0.2
4,137,005	+		PP_3641	0.16	-0.5
4,137,005	+		PP_3641	0.16	-0.5
4,137,006	-		PP_3641	0.16	-0.3
4,137,006	-		PP_3641	0.16	-0.9
4,137,006	-		PP_3641	0.16	-1.2
4,137,006	-		PP_3641	0.16	-0.0
4,137,006	-		PP_3641	0.16	-0.8
4,137,284	+		PP_3641	0.36	-0.5
4,137,285	-		PP_3641	0.36	-0.4
4,137,461	+		PP_3641	0.48	-1.8
4,137,461	+		PP_3641	0.48	-0.2
4,137,461	+		PP_3641	0.48	+0.6
4,137,461	+		PP_3641	0.48	-0.6
4,137,461	+		PP_3641	0.48	-0.5
4,137,461	+		PP_3641	0.48	-0.8
4,137,462	-		PP_3641	0.48	-0.2
4,137,462	-		PP_3641	0.48	+0.9
4,137,462	-		PP_3641	0.48	-0.2
4,137,506	+		PP_3641	0.52	-0.7
4,137,516	-		PP_3641	0.52	-1.1
4,137,516	-		PP_3641	0.52	-0.9
4,137,516	-		PP_3641	0.52	-0.4
4,137,681	+		PP_3641	0.64	+0.8
4,137,681	+		PP_3641	0.64	-1.6
4,137,751	+		PP_3641	0.69	+0.2
4,137,842	+		PP_3641	0.75	-0.5
4,137,842	+		PP_3641	0.75	-0.3
4,137,842	+		PP_3641	0.75	+0.3
4,137,843	-		PP_3641	0.76	-0.1
4,137,881	+		PP_3641	0.78	+0.3
4,138,133	+				+0.0
4,138,134	-				-0.7
4,138,134	-				-0.7
4,138,211	+				+0.8
4,138,220	-				+0.9
4,138,407	+				+0.1
4,138,494	+				+0.1
4,138,661	+		PP_3643	0.33	-0.1
4,138,661	+		PP_3643	0.33	-1.7
4,138,662	-		PP_3643	0.33	-0.0
4,138,683	+		PP_3643	0.37	+0.1
4,138,865	+		PP_3643	0.75	-0.4
4,138,866	-		PP_3643	0.75	-0.5
4,138,866	-		PP_3643	0.75	+0.2
4,138,946	+				-0.7
4,138,946	+				-0.4
4,138,946	+				+0.7
4,139,045	+				-0.3