Strain Fitness in Pseudomonas putida KT2440 around PP_3332

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
3,771,623	-		PP_3331	0.69	-1.0
3,771,717	+		PP_3331	0.76	+1.1
3,771,717	+		PP_3331	0.76	+1.1
3,771,717	+		PP_3331	0.76	-0.1
3,771,740	+		PP_3331	0.77	+0.6
3,771,749	+		PP_3331	0.78	-0.1
3,771,752	+		PP_3331	0.78	+0.0
3,771,752	+		PP_3331	0.78	+0.5
3,771,753	-		PP_3331	0.78	+0.2
3,771,780	-		PP_3331	0.80	-0.6
3,771,780	-		PP_3331	0.80	+0.6
3,771,807	+		PP_3331	0.82	-0.2
3,771,808	-		PP_3331	0.82	+0.2
3,772,036	-				+1.1
3,772,036	-				+0.6
3,772,036	-				-1.1
3,772,036	-				+0.2
3,772,153	-				-0.2
3,772,223	+				+1.3
3,772,224	-				-0.0
3,772,285	+				+0.2
3,772,285	+				+0.6
3,772,349	+				-1.4
3,772,350	-				-1.0
3,772,350	-				+1.2
3,772,350	-				-0.4
3,772,350	-				+0.7
3,772,350	-				-0.6
3,772,646	+		PP_3332	0.89	-1.1
3,772,647	-		PP_3332	0.89	-0.3
3,772,647	-		PP_3332	0.89	+0.9
3,772,665	-				+0.1
3,772,665	-				+0.5
3,772,703	+				+0.3
3,772,724	+				+0.3
3,772,725	-				-0.5
3,772,725	-				-1.2
3,772,756	+				+1.2
3,772,757	-				-1.2
3,772,851	+		PP_3333	0.12	-1.1
3,772,852	-		PP_3333	0.12	-0.5
3,772,951	+		PP_3333	0.38	-1.5
3,772,952	-		PP_3333	0.38	-0.9
3,773,222	-				-0.3
3,773,516	+		PP_5743	0.22	-0.8
3,773,584	+		PP_5743	0.28	+0.7
3,773,586	+		PP_5743	0.29	-0.1
3,773,586	+		PP_5743	0.29	+0.3
3,773,586	+		PP_5743	0.29	+0.2
3,773,587	-		PP_5743	0.29	-1.6
3,773,587	-		PP_5743	0.29	-0.4
3,773,634	+		PP_5743	0.33	+1.2
3,773,655	+		PP_5743	0.35	-0.2
3,773,655	+		PP_5743	0.35	+0.2
3,773,655	+		PP_5743	0.35	-0.7
3,773,655	+		PP_5743	0.35	-0.8
3,773,655	+		PP_5743	0.35	-1.1
3,773,656	-		PP_5743	0.36	+0.9
3,773,656	-		PP_5743	0.36	+0.5
3,773,656	-		PP_5743	0.36	+0.3
3,773,656	-		PP_5743	0.36	+0.2
3,773,656	-		PP_5743	0.36	-0.7
3,773,656	-		PP_5743	0.36	-0.1
3,773,656	-		PP_5743	0.36	-0.3
3,773,658	-		PP_5743	0.36	-1.0
3,773,658	-		PP_5743	0.36	-0.2