Strain Fitness in Pseudomonas putida KT2440 around PP_2046

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
2,326,439	-		PP_2045	0.56	-0.8
2,326,636	+		PP_2045	0.66	+0.6
2,326,636	+		PP_2045	0.66	-0.8
2,326,636	+		PP_2045	0.66	-1.2
2,326,636	+		PP_2045	0.66	+0.9
2,326,637	-		PP_2045	0.66	-0.5
2,326,642	+		PP_2045	0.66	-1.2
2,326,642	+		PP_2045	0.66	-0.1
2,326,642	+		PP_2045	0.66	+0.7
2,326,642	+		PP_2045	0.66	-0.3
2,326,642	+		PP_2045	0.66	+0.3
2,326,643	-		PP_2045	0.66	+0.9
2,326,643	-		PP_2045	0.66	+0.3
2,326,804	+		PP_2045	0.75	-0.8
2,326,804	+		PP_2045	0.75	-0.7
2,326,804	+		PP_2045	0.75	-0.8
2,326,847	-		PP_2045	0.77	-0.7
2,326,960	+				+4.0
2,326,960	+		PP_2045	0.82	+0.2
2,326,960	+		PP_2045	0.82	-0.2
2,326,960	+		PP_2045	0.82	-1.1
2,326,961	-		PP_2045	0.83	+0.1
2,326,961	-		PP_2045	0.83	-0.9
2,326,961	-		PP_2045	0.83	+0.1
2,327,068	+		PP_2045	0.88	+1.1
2,327,069	-		PP_2045	0.88	-0.8
2,327,338	+				+0.8
2,327,365	+				+0.5
2,327,622	+		PP_2046	0.23	+0.1
2,327,636	-		PP_2046	0.25	+0.2
2,327,636	-		PP_2046	0.25	-0.8
2,327,638	-		PP_2046	0.25	-0.3
2,327,948	+		PP_2046	0.59	-2.2
2,327,948	+		PP_2046	0.59	+0.1
2,328,242	+				-1.5
2,328,242	+				+0.6
2,328,365	+				+0.5
2,328,365	+				+0.4
2,328,366	-				-0.1
2,328,366	-				+0.8
2,328,366	-				+0.1
2,328,385	+				+1.5
2,328,385	+				-0.2
2,328,385	+				-0.1
2,328,385	+				-1.1
2,328,385	+				+0.3
2,328,385	+				-0.5
2,328,386	-				+0.2
2,328,386	-				+0.6
2,328,389	+				-0.5
2,328,389	+				+0.7
2,328,389	+				-0.0
2,328,390	-				-0.5
2,328,390	-				-1.2
2,328,418	+				-0.2
2,328,418	+				-1.4
2,328,419	-				-0.5
2,328,451	-				-1.0
2,328,451	-				+0.2
2,328,695	+		PP_2047	0.23	-0.2
2,329,010	+		PP_2047	0.48	+0.4
2,329,011	-		PP_2047	0.48	-1.0
2,329,011	-		PP_2047	0.48	-0.5
2,329,072	-		PP_2047	0.53	+0.3
2,329,072	-		PP_2047	0.53	+0.2
2,329,195	+		PP_2047	0.63	-0.1
2,329,196	-		PP_2047	0.63	-1.1
2,329,244	+		PP_2047	0.67	-0.6
2,329,245	-		PP_2047	0.67	+0.8
2,329,245	-		PP_2047	0.67	-1.2
2,329,254	-		PP_2047	0.68	+0.2