Strain Fitness in Pseudomonas putida KT2440 around PP_1418

Experiment: L-tyrosine 5 mM (C)

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	L-tyrosine 5 mM (C)
1,617,207	-				-1.5
1,617,242	+				-1.0
1,617,243	-				-1.4
1,617,243	-				+0.8
1,617,252	+				-2.5
1,617,561	+		PP_1417	0.62	-2.3
1,617,561	+		PP_1417	0.62	-1.8
1,617,561	+		PP_1417	0.62	-2.4
1,617,561	+		PP_1417	0.62	-1.2
1,617,562	-		PP_1417	0.62	-1.6
1,617,627	+		PP_1417	0.76	-2.6
1,617,628	-		PP_1417	0.76	-2.7
1,617,646	-		PP_1417	0.79	-1.8
1,617,646	-		PP_1417	0.79	+0.2
1,617,646	-		PP_1417	0.79	-0.7
1,617,804	+				-2.6
1,617,825	+				-0.7
1,617,826	-				+1.1
1,617,826	-				-1.3
1,617,826	-				-0.2
1,617,838	-				+0.8
1,617,919	+				-2.2
1,617,920	-				+0.9
1,617,955	+				-2.5
1,617,956	-				-1.4
1,617,956	-				+2.4
1,617,979	+				-1.9
1,617,979	+				-2.5
1,617,980	-				-2.7
1,617,980	-				-1.2
1,618,093	+		PP_1418	0.18	-2.2
1,618,093	+		PP_1418	0.18	+1.4
1,618,093	+		PP_1418	0.18	-1.1
1,618,123	+		PP_1418	0.21	-0.2
1,618,124	-		PP_1418	0.21	-2.2
1,618,348	+		PP_1418	0.44	-2.4
1,618,495	+		PP_1418	0.59	-1.7
1,618,496	-		PP_1418	0.59	-2.3
1,618,528	+		PP_1418	0.62	-1.5
1,618,528	+		PP_1418	0.62	-1.4
1,618,529	-		PP_1418	0.62	-1.2
1,618,602	-		PP_1418	0.70	-3.0
1,618,672	+		PP_1418	0.77	-3.2
1,618,673	-		PP_1418	0.77	-1.2
1,618,702	+		PP_1418	0.80	-2.5
1,618,702	+		PP_1418	0.80	-1.0
1,618,702	+		PP_1418	0.80	-1.3
1,618,702	+		PP_1418	0.80	-0.4
1,618,703	-		PP_1418	0.80	-0.9
1,618,703	-		PP_1418	0.80	-1.3
1,618,703	-		PP_1418	0.80	-0.8
1,618,703	-		PP_1418	0.80	-2.2
1,618,740	+		PP_1418	0.84	-2.5
1,618,740	+		PP_1418	0.84	-0.6
1,618,741	-		PP_1418	0.84	-1.6
1,618,939	-				+0.2
1,618,964	+				-1.7
1,618,964	+				-0.6
1,618,965	-				+0.3
1,618,965	-				-0.8
1,618,965	-				+0.1
1,619,065	+				-0.8
1,619,066	-				-0.4
1,619,066	-				-0.8
1,619,066	-				+0.2
1,619,073	-				-0.6
1,619,073	-				-0.0
1,619,073	-				+0.3
1,619,147	+		PP_1419	0.16	-2.3
1,619,196	-		PP_1419	0.19	-0.0
1,619,202	-		PP_1419	0.20	-0.6
1,619,268	-		PP_1419	0.25	-2.2
1,619,268	-		PP_1419	0.25	+0.1
1,619,289	-		PP_1419	0.27	+0.9
1,619,355	-		PP_1419	0.32	+0.3
1,619,355	-		PP_1419	0.32	-1.0
1,619,501	+		PP_1419	0.43	-1.7
1,619,506	-		PP_1419	0.43	-1.4
1,619,506	-		PP_1419	0.43	-1.3
1,619,528	+		PP_1419	0.45	-2.2
1,619,528	+		PP_1419	0.45	-2.4
1,619,558	+		PP_1419	0.48	-1.3
1,619,559	-		PP_1419	0.48	-0.9
1,619,855	+		PP_1419	0.71	-2.3