Strain Fitness in Pseudomonas putida KT2440 around PP_0838

Experiment: mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0836 and PP_0837 are separated by 118 nucleotidesPP_0837 and PP_0838 are separated by 168 nucleotidesPP_0838 and PP_0839 are separated by 151 nucleotidesPP_0839 and PP_0840 are separated by 3 nucleotides PP_0836: PP_0836 - Sec translocation complex subunit SecF, at 973,582 to 974,490 _0836 PP_0837: PP_0837 - putative regulator of flagellation, at 974,609 to 975,151 _0837 PP_0838: PP_0838 - inositol monophosphatase / glycerol-2-phosphatase, at 975,320 to 976,138 _0838 PP_0839: PP_0839 - tRNA Cm32/Um32 methyltransferase, at 976,290 to 977,045 _0839 PP_0840: PP_0840 - serine acetyltransferase, at 977,049 to 977,834 _0840 Position (kb) 975 976 977Strain fitness (log2 ratio) -2 -1 0 1at 974.488 kb on + strandat 974.591 kb on + strandat 974.592 kb on - strandat 974.615 kb on - strandat 974.656 kb on - strandat 974.656 kb on - strandat 974.656 kb on - strandat 974.681 kb on + strand, within PP_0837at 974.681 kb on + strand, within PP_0837at 974.682 kb on - strand, within PP_0837at 974.682 kb on - strand, within PP_0837at 974.827 kb on + strand, within PP_0837at 974.863 kb on + strand, within PP_0837at 974.968 kb on + strand, within PP_0837at 974.968 kb on + strand, within PP_0837at 974.968 kb on + strand, within PP_0837at 974.972 kb on + strand, within PP_0837at 974.972 kb on + strand, within PP_0837at 974.973 kb on - strand, within PP_0837at 974.973 kb on - strand, within PP_0837at 975.044 kb on + strand, within PP_0837at 975.045 kb on - strand, within PP_0837at 975.045 kb on - strand, within PP_0837at 975.063 kb on + strand, within PP_0837at 975.064 kb on - strand, within PP_0837at 975.195 kb on + strandat 975.217 kb on + strandat 975.217 kb on + strandat 975.217 kb on + strandat 975.218 kb on - strandat 975.247 kb on + strandat 976.230 kb on + strandat 976.248 kb on - strandat 976.302 kb on - strandat 976.322 kb on + strandat 976.508 kb on + strand, within PP_0839at 976.854 kb on + strand, within PP_0839at 976.941 kb on + strand, within PP_0839at 976.942 kb on - strand, within PP_0839at 976.942 kb on - strand, within PP_0839at 977.072 kb on + strandat 977.073 kb on - strandat 977.083 kb on + strandat 977.084 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM
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974,488 + -1.1
974,591 + +0.2
974,592 - +0.3
974,615 - +0.7
974,656 - -1.5
974,656 - +0.7
974,656 - +0.4
974,681 + PP_0837 0.13 -2.1
974,681 + PP_0837 0.13 +1.7
974,682 - PP_0837 0.13 +1.1
974,682 - PP_0837 0.13 +1.1
974,827 + PP_0837 0.40 +0.2
974,863 + PP_0837 0.47 -0.6
974,968 + PP_0837 0.66 +0.7
974,968 + PP_0837 0.66 -0.1
974,968 + PP_0837 0.66 -0.3
974,972 + PP_0837 0.67 +0.3
974,972 + PP_0837 0.67 -1.2
974,973 - PP_0837 0.67 -1.5
974,973 - PP_0837 0.67 -2.0
975,044 + PP_0837 0.80 +0.3
975,045 - PP_0837 0.80 +0.0
975,045 - PP_0837 0.80 +0.2
975,063 + PP_0837 0.84 +0.9
975,064 - PP_0837 0.84 +0.0
975,195 + -0.1
975,217 + -0.1
975,217 + +1.5
975,217 + +0.4
975,218 - +0.2
975,247 + -0.3
976,230 + +1.2
976,248 - +0.7
976,302 - -0.6
976,322 + +0.0
976,508 + PP_0839 0.29 -0.9
976,854 + PP_0839 0.75 -1.0
976,941 + PP_0839 0.86 +0.8
976,942 - PP_0839 0.86 +0.0
976,942 - PP_0839 0.86 +1.0
977,072 + -0.8
977,073 - +1.2
977,083 + -0.8
977,084 - +0.7

Or see this region's nucleotide sequence