Experiment: mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0606 and PP_0607 are separated by 76 nucleotides PP_0607 and PP_0608 overlap by 77 nucleotides PP_0608 and PP_0609 overlap by 4 nucleotides PP_0609 and PP_0610 overlap by 4 nucleotides
PP_0606: PP_0606 - 4-hydroxy-3-methylbut-2-enyl diphosphate reductase, at 713,987 to 714,934
_0606
PP_0607: PP_0607 - putative Type IV pili biogenesis protein FimT, at 715,011 to 715,493
_0607
PP_0608: PP_0608 - putative type 4 fimbrial biogenesis protein, at 715,417 to 715,785
_0608
PP_0609: PP_0609 - conserved exported protein of unknown function, at 715,782 to 716,426
_0609
PP_0610: PP_0610 - conserved exported protein of unknown function, at 716,423 to 716,887
_0610
Position (kb) 715
716 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 715.200 kb on + strand, within PP_0607 at 715.283 kb on + strand, within PP_0607 at 715.408 kb on + strand, within PP_0607 at 715.467 kb on + strand at 715.468 kb on - strand at 715.468 kb on - strand at 715.476 kb on + strand at 715.476 kb on + strand at 715.477 kb on - strand at 715.523 kb on - strand, within PP_0608 at 715.524 kb on + strand, within PP_0608 at 715.524 kb on + strand, within PP_0608 at 715.525 kb on - strand, within PP_0608 at 715.525 kb on - strand, within PP_0608 at 715.525 kb on - strand, within PP_0608 at 715.525 kb on - strand, within PP_0608 at 715.671 kb on + strand, within PP_0608 at 715.671 kb on + strand, within PP_0608 at 715.672 kb on - strand, within PP_0608 at 715.672 kb on - strand, within PP_0608 at 715.835 kb on + strand at 716.029 kb on + strand, within PP_0609 at 716.185 kb on + strand, within PP_0609 at 716.185 kb on + strand at 716.185 kb on + strand, within PP_0609 at 716.186 kb on - strand, within PP_0609 at 716.186 kb on - strand at 716.186 kb on - strand, within PP_0609 at 716.186 kb on - strand, within PP_0609 at 716.186 kb on - strand, within PP_0609 at 716.208 kb on + strand, within PP_0609 at 716.208 kb on + strand, within PP_0609 at 716.208 kb on + strand, within PP_0609 at 716.208 kb on + strand, within PP_0609 at 716.208 kb on + strand, within PP_0609 at 716.208 kb on + strand, within PP_0609 at 716.209 kb on - strand, within PP_0609 at 716.209 kb on - strand, within PP_0609 at 716.214 kb on + strand, within PP_0609 at 716.214 kb on + strand, within PP_0609 at 716.214 kb on + strand, within PP_0609 at 716.214 kb on + strand, within PP_0609 at 716.215 kb on - strand at 716.215 kb on - strand, within PP_0609 at 716.215 kb on - strand, within PP_0609 at 716.231 kb on + strand, within PP_0609 at 716.232 kb on - strand, within PP_0609 at 716.232 kb on - strand, within PP_0609 at 716.232 kb on - strand, within PP_0609 at 716.280 kb on - strand, within PP_0609 at 716.337 kb on - strand, within PP_0609 at 716.352 kb on + strand, within PP_0609 at 716.353 kb on - strand, within PP_0609 at 716.452 kb on - strand at 716.629 kb on + strand, within PP_0610 at 716.683 kb on + strand, within PP_0610 at 716.684 kb on - strand, within PP_0610
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM remove 715,200 + PP_0607 0.39 +0.9 715,283 + PP_0607 0.56 +0.4 715,408 + PP_0607 0.82 +0.3 715,467 + -0.7 715,468 - -1.6 715,468 - +0.5 715,476 + +0.7 715,476 + -0.1 715,477 - +0.0 715,523 - PP_0608 0.29 +0.6 715,524 + PP_0608 0.29 +1.0 715,524 + PP_0608 0.29 +0.0 715,525 - PP_0608 0.29 +0.8 715,525 - PP_0608 0.29 -3.2 715,525 - PP_0608 0.29 +0.2 715,525 - PP_0608 0.29 +0.1 715,671 + PP_0608 0.69 +0.3 715,671 + PP_0608 0.69 +0.3 715,672 - PP_0608 0.69 +0.1 715,672 - PP_0608 0.69 +1.1 715,835 + +1.9 716,029 + PP_0609 0.38 +0.2 716,185 + PP_0609 0.62 -0.6 716,185 + +0.6 716,185 + PP_0609 0.62 +1.1 716,186 - PP_0609 0.63 +0.6 716,186 - +2.2 716,186 - PP_0609 0.63 +0.2 716,186 - PP_0609 0.63 -2.1 716,186 - PP_0609 0.63 -1.0 716,208 + PP_0609 0.66 -0.9 716,208 + PP_0609 0.66 +1.1 716,208 + PP_0609 0.66 -0.2 716,208 + PP_0609 0.66 +0.6 716,208 + PP_0609 0.66 +0.5 716,208 + PP_0609 0.66 +0.3 716,209 - PP_0609 0.66 +0.2 716,209 - PP_0609 0.66 -0.1 716,214 + PP_0609 0.67 +1.0 716,214 + PP_0609 0.67 -0.6 716,214 + PP_0609 0.67 +0.9 716,214 + PP_0609 0.67 -1.7 716,215 - +0.4 716,215 - PP_0609 0.67 -0.7 716,215 - PP_0609 0.67 +0.2 716,231 + PP_0609 0.70 -0.3 716,232 - PP_0609 0.70 +0.1 716,232 - PP_0609 0.70 -0.8 716,232 - PP_0609 0.70 -0.2 716,280 - PP_0609 0.77 -0.6 716,337 - PP_0609 0.86 -0.8 716,352 + PP_0609 0.88 -0.0 716,353 - PP_0609 0.89 -0.1 716,452 - -0.2 716,629 + PP_0610 0.44 +0.3 716,683 + PP_0610 0.56 +0.2 716,684 - PP_0610 0.56 -1.1
Or see this region's nucleotide sequence