Strain Fitness in Pseudomonas putida KT2440 around PP_1593

Experiment: mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntPP_1592 and PP_1593 are separated by 181 nucleotidesPP_1593 and PP_1594 overlap by 4 nucleotidesPP_1594 and PP_1595 are separated by 15 nucleotides PP_1592: PP_1592 - Elongation factor Ts, at 1,786,170 to 1,787,033 _1592 PP_1593: PP_1593 - Uridylate kinase, at 1,787,215 to 1,787,958 _1593 PP_1594: PP_1594 - Ribosome-recycling factor, at 1,787,955 to 1,788,512 _1594 PP_1595: PP_1595 - Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific), at 1,788,528 to 1,789,283 _1595 Position (kb) 1787 1788Strain fitness (log2 ratio) -1 0 1 2 3at 1787.110 kb on + strandat 1787.193 kb on + strandat 1788.510 kb on + strandat 1788.510 kb on + strandat 1788.510 kb on + strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and Parachlorophenylalanine 10 mM
remove
1,787,110 + +0.4
1,787,193 + +2.8
1,788,510 + +0.8
1,788,510 + -0.4
1,788,510 + +1.7

Or see this region's nucleotide sequence