Experiment: mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_5613 and PP_5614 are separated by 648 nucleotides PP_5614 and PP_5615 are separated by 149 nucleotides PP_5615 and PP_5616 are separated by 188 nucleotides
PP_5613: PP_5613 - protein of unknown function, at 4,191,825 to 4,192,394
_5613
PP_5614: PP_5614 - protein of unknown function, at 4,193,043 to 4,193,498
_5614
PP_5615: PP_5615 - conserved protein of unknown function, at 4,193,648 to 4,193,959
_5615
PP_5616: PP_5616 - conserved protein of unknown function, at 4,194,148 to 4,194,552
_5616
Position (kb) 4193
4194 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 4192.044 kb on + strand, within PP_5613 at 4192.044 kb on + strand, within PP_5613 at 4192.067 kb on + strand, within PP_5613 at 4192.067 kb on + strand, within PP_5613 at 4192.101 kb on + strand, within PP_5613 at 4192.115 kb on + strand, within PP_5613 at 4192.211 kb on + strand, within PP_5613 at 4192.212 kb on - strand, within PP_5613 at 4192.322 kb on - strand, within PP_5613 at 4192.344 kb on + strand at 4192.408 kb on + strand at 4192.425 kb on + strand at 4192.431 kb on + strand at 4192.451 kb on + strand at 4192.451 kb on + strand at 4192.451 kb on + strand at 4192.452 kb on - strand at 4192.514 kb on + strand at 4192.515 kb on - strand at 4192.544 kb on + strand at 4192.545 kb on - strand at 4192.584 kb on - strand at 4192.671 kb on + strand at 4192.704 kb on + strand at 4192.832 kb on + strand at 4192.832 kb on + strand at 4192.832 kb on + strand at 4192.833 kb on - strand at 4192.833 kb on - strand at 4192.833 kb on - strand at 4192.833 kb on - strand at 4192.856 kb on + strand at 4192.857 kb on - strand at 4192.875 kb on + strand at 4192.875 kb on + strand at 4192.876 kb on - strand at 4192.882 kb on - strand at 4192.882 kb on - strand at 4192.907 kb on - strand at 4192.925 kb on + strand at 4192.926 kb on - strand at 4192.995 kb on + strand at 4192.995 kb on + strand at 4192.995 kb on + strand at 4192.995 kb on + strand at 4193.010 kb on + strand at 4193.010 kb on + strand at 4193.112 kb on + strand, within PP_5614 at 4193.112 kb on + strand, within PP_5614 at 4193.113 kb on - strand, within PP_5614 at 4193.152 kb on + strand, within PP_5614 at 4193.153 kb on - strand, within PP_5614 at 4193.159 kb on + strand, within PP_5614 at 4193.223 kb on + strand, within PP_5614 at 4193.224 kb on - strand, within PP_5614 at 4193.224 kb on - strand, within PP_5614 at 4193.224 kb on - strand, within PP_5614 at 4193.274 kb on - strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.336 kb on + strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.337 kb on - strand, within PP_5614 at 4193.343 kb on + strand, within PP_5614 at 4193.344 kb on - strand, within PP_5614 at 4193.344 kb on - strand, within PP_5614 at 4193.344 kb on - strand at 4193.503 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.515 kb on + strand at 4193.516 kb on - strand at 4193.516 kb on - strand at 4193.516 kb on - strand at 4193.516 kb on - strand at 4193.516 kb on - strand at 4193.516 kb on - strand at 4193.517 kb on + strand at 4193.539 kb on + strand at 4193.539 kb on + strand at 4193.540 kb on - strand at 4193.606 kb on + strand at 4193.606 kb on + strand at 4193.607 kb on - strand at 4193.636 kb on + strand at 4193.637 kb on - strand at 4193.637 kb on - strand at 4193.685 kb on + strand at 4193.685 kb on + strand, within PP_5615 at 4193.685 kb on + strand, within PP_5615 at 4193.686 kb on - strand, within PP_5615 at 4193.686 kb on - strand, within PP_5615 at 4193.703 kb on + strand, within PP_5615 at 4193.703 kb on + strand, within PP_5615 at 4193.703 kb on + strand, within PP_5615 at 4193.703 kb on + strand, within PP_5615 at 4193.703 kb on + strand, within PP_5615 at 4193.703 kb on + strand, within PP_5615 at 4193.704 kb on - strand, within PP_5615 at 4193.754 kb on + strand, within PP_5615 at 4193.755 kb on - strand, within PP_5615 at 4193.776 kb on + strand, within PP_5615 at 4193.776 kb on + strand, within PP_5615 at 4193.776 kb on + strand, within PP_5615 at 4193.776 kb on + strand, within PP_5615 at 4193.777 kb on - strand, within PP_5615 at 4193.777 kb on - strand, within PP_5615 at 4193.777 kb on - strand, within PP_5615 at 4193.777 kb on - strand, within PP_5615 at 4193.777 kb on - strand, within PP_5615 at 4193.844 kb on - strand, within PP_5615 at 4193.905 kb on + strand, within PP_5615 at 4193.933 kb on + strand at 4193.934 kb on - strand at 4193.934 kb on - strand at 4193.958 kb on - strand at 4194.054 kb on + strand at 4194.054 kb on + strand at 4194.054 kb on + strand at 4194.054 kb on + strand at 4194.055 kb on - strand at 4194.055 kb on - strand at 4194.115 kb on + strand at 4194.139 kb on + strand at 4194.150 kb on - strand at 4194.150 kb on - strand at 4194.242 kb on + strand, within PP_5616 at 4194.256 kb on + strand, within PP_5616 at 4194.257 kb on - strand, within PP_5616 at 4194.310 kb on + strand, within PP_5616 at 4194.312 kb on + strand, within PP_5616 at 4194.312 kb on + strand, within PP_5616 at 4194.312 kb on + strand, within PP_5616 at 4194.313 kb on - strand, within PP_5616 at 4194.313 kb on - strand, within PP_5616 at 4194.313 kb on - strand, within PP_5616 at 4194.332 kb on + strand, within PP_5616 at 4194.457 kb on + strand, within PP_5616 at 4194.457 kb on + strand, within PP_5616 at 4194.457 kb on + strand, within PP_5616 at 4194.457 kb on + strand, within PP_5616 at 4194.457 kb on + strand, within PP_5616
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM remove 4,192,044 + PP_5613 0.38 -1.2 4,192,044 + PP_5613 0.38 +0.4 4,192,067 + PP_5613 0.42 -1.3 4,192,067 + PP_5613 0.42 +0.6 4,192,101 + PP_5613 0.48 -0.5 4,192,115 + PP_5613 0.51 -1.7 4,192,211 + PP_5613 0.68 +0.7 4,192,212 - PP_5613 0.68 +0.5 4,192,322 - PP_5613 0.87 -1.7 4,192,344 + -0.1 4,192,408 + +1.5 4,192,425 + -2.3 4,192,431 + -2.8 4,192,451 + +0.1 4,192,451 + -3.5 4,192,451 + -0.3 4,192,452 - -1.2 4,192,514 + +0.2 4,192,515 - +1.3 4,192,544 + -0.6 4,192,545 - +0.8 4,192,584 - +0.2 4,192,671 + -2.8 4,192,704 + +2.1 4,192,832 + -1.5 4,192,832 + -0.4 4,192,832 + -0.3 4,192,833 - -0.4 4,192,833 - -0.7 4,192,833 - -1.1 4,192,833 - -0.1 4,192,856 + -0.6 4,192,857 - -0.4 4,192,875 + -0.1 4,192,875 + +0.2 4,192,876 - +0.4 4,192,882 - -2.1 4,192,882 - +0.0 4,192,907 - +0.5 4,192,925 + +1.1 4,192,926 - -0.2 4,192,995 + -0.3 4,192,995 + +0.1 4,192,995 + -0.4 4,192,995 + +0.9 4,193,010 + +0.3 4,193,010 + -0.1 4,193,112 + PP_5614 0.15 -1.7 4,193,112 + PP_5614 0.15 +0.4 4,193,113 - PP_5614 0.15 -1.4 4,193,152 + PP_5614 0.24 -1.2 4,193,153 - PP_5614 0.24 +0.8 4,193,159 + PP_5614 0.25 -0.8 4,193,223 + PP_5614 0.39 -0.6 4,193,224 - PP_5614 0.40 -1.9 4,193,224 - PP_5614 0.40 -3.3 4,193,224 - PP_5614 0.40 +0.3 4,193,274 - PP_5614 0.51 +0.4 4,193,336 + PP_5614 0.64 -0.8 4,193,336 + PP_5614 0.64 +0.1 4,193,336 + PP_5614 0.64 -0.5 4,193,336 + PP_5614 0.64 -0.3 4,193,336 + PP_5614 0.64 +0.3 4,193,336 + PP_5614 0.64 -0.1 4,193,336 + PP_5614 0.64 -0.6 4,193,336 + PP_5614 0.64 -1.0 4,193,336 + PP_5614 0.64 -0.4 4,193,336 + PP_5614 0.64 -0.4 4,193,336 + PP_5614 0.64 +0.4 4,193,336 + PP_5614 0.64 -1.6 4,193,337 - PP_5614 0.64 -0.0 4,193,337 - PP_5614 0.64 +0.5 4,193,337 - PP_5614 0.64 -0.7 4,193,337 - PP_5614 0.64 +0.1 4,193,337 - PP_5614 0.64 -0.8 4,193,337 - PP_5614 0.64 -0.5 4,193,337 - PP_5614 0.64 -1.8 4,193,337 - PP_5614 0.64 -1.5 4,193,337 - PP_5614 0.64 -0.4 4,193,337 - PP_5614 0.64 +0.4 4,193,337 - PP_5614 0.64 -0.0 4,193,337 - PP_5614 0.64 +0.4 4,193,343 + PP_5614 0.66 +0.9 4,193,344 - PP_5614 0.66 +0.0 4,193,344 - PP_5614 0.66 +0.2 4,193,344 - +0.5 4,193,503 + +0.0 4,193,515 + +0.9 4,193,515 + +0.3 4,193,515 + -0.6 4,193,515 + +0.9 4,193,515 + -1.9 4,193,515 + -1.1 4,193,515 + -0.7 4,193,515 + +0.4 4,193,515 + -0.8 4,193,515 + -0.1 4,193,516 - -1.0 4,193,516 - +1.0 4,193,516 - +0.3 4,193,516 - +0.5 4,193,516 - +1.2 4,193,516 - -0.7 4,193,517 + -0.4 4,193,539 + +0.2 4,193,539 + +1.0 4,193,540 - -0.6 4,193,606 + -1.2 4,193,606 + -0.1 4,193,607 - -0.4 4,193,636 + -0.4 4,193,637 - -0.9 4,193,637 - +0.2 4,193,685 + -0.1 4,193,685 + PP_5615 0.12 -0.8 4,193,685 + PP_5615 0.12 +0.2 4,193,686 - PP_5615 0.12 +0.3 4,193,686 - PP_5615 0.12 -0.9 4,193,703 + PP_5615 0.18 +0.1 4,193,703 + PP_5615 0.18 -2.7 4,193,703 + PP_5615 0.18 -0.0 4,193,703 + PP_5615 0.18 +1.4 4,193,703 + PP_5615 0.18 -0.3 4,193,703 + PP_5615 0.18 -1.1 4,193,704 - PP_5615 0.18 +1.7 4,193,754 + PP_5615 0.34 -0.7 4,193,755 - PP_5615 0.34 +0.9 4,193,776 + PP_5615 0.41 -0.9 4,193,776 + PP_5615 0.41 -1.8 4,193,776 + PP_5615 0.41 +0.9 4,193,776 + PP_5615 0.41 -0.2 4,193,777 - PP_5615 0.41 -0.3 4,193,777 - PP_5615 0.41 +0.5 4,193,777 - PP_5615 0.41 +0.5 4,193,777 - PP_5615 0.41 -0.4 4,193,777 - PP_5615 0.41 -0.1 4,193,844 - PP_5615 0.63 -0.6 4,193,905 + PP_5615 0.82 +0.3 4,193,933 + -0.4 4,193,934 - -0.3 4,193,934 - -1.6 4,193,958 - -0.4 4,194,054 + -0.3 4,194,054 + -0.2 4,194,054 + -1.3 4,194,054 + +0.5 4,194,055 - -0.9 4,194,055 - -0.3 4,194,115 + +1.6 4,194,139 + +0.7 4,194,150 - -3.1 4,194,150 - -1.0 4,194,242 + PP_5616 0.23 -0.4 4,194,256 + PP_5616 0.27 +0.4 4,194,257 - PP_5616 0.27 +0.5 4,194,310 + PP_5616 0.40 +0.9 4,194,312 + PP_5616 0.40 -1.9 4,194,312 + PP_5616 0.40 +1.1 4,194,312 + PP_5616 0.40 -2.3 4,194,313 - PP_5616 0.41 +1.1 4,194,313 - PP_5616 0.41 -1.4 4,194,313 - PP_5616 0.41 +0.0 4,194,332 + PP_5616 0.45 +0.9 4,194,457 + PP_5616 0.76 -3.3 4,194,457 + PP_5616 0.76 -0.2 4,194,457 + PP_5616 0.76 -0.4 4,194,457 + PP_5616 0.76 +0.1 4,194,457 + PP_5616 0.76 +0.5
Or see this region's nucleotide sequence