Strain Fitness in Pseudomonas putida KT2440 around PP_0675

Experiment: mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntPP_0674 and PP_0675 are separated by 212 nucleotidesPP_0675 and PP_0676 are separated by 59 nucleotidesPP_0676 and PP_0677 are separated by 67 nucleotides PP_0674: PP_0674 - ADP/ATP ratio sensor and inhibitor of translation, at 786,883 to 788,550 _0674 PP_0675: PP_0675 - glutamate dehydrogenase, NADP-dependent, at 788,763 to 790,112 _0675 PP_0676: PP_0676 - putative Transcription elongation factor, at 790,172 to 790,669 _0676 PP_0677: PP_0677 - putative Lipoprotein, at 790,737 to 791,093 _0677 Position (kb) 788 789 790 791Strain fitness (log2 ratio) -2 -1 0 1 2at 787.816 kb on + strand, within PP_0674at 787.816 kb on + strand, within PP_0674at 787.816 kb on + strand, within PP_0674at 787.816 kb on + strand, within PP_0674at 787.879 kb on + strand, within PP_0674at 787.965 kb on + strand, within PP_0674at 787.966 kb on - strand, within PP_0674at 788.039 kb on + strand, within PP_0674at 788.039 kb on + strand, within PP_0674at 788.140 kb on + strand, within PP_0674at 788.141 kb on - strand, within PP_0674at 788.141 kb on - strand, within PP_0674at 788.141 kb on - strand, within PP_0674at 788.157 kb on + strand, within PP_0674at 788.157 kb on + strand, within PP_0674at 788.161 kb on + strand, within PP_0674at 788.161 kb on + strand, within PP_0674at 788.161 kb on + strand, within PP_0674at 788.161 kb on + strand, within PP_0674at 788.161 kb on + strand, within PP_0674at 788.161 kb on + strand, within PP_0674at 788.161 kb on + strand, within PP_0674at 788.162 kb on - strand, within PP_0674at 788.162 kb on - strand, within PP_0674at 788.162 kb on - strand, within PP_0674at 788.162 kb on - strand, within PP_0674at 788.162 kb on - strand, within PP_0674at 788.457 kb on + strandat 788.458 kb on - strandat 788.461 kb on + strandat 788.461 kb on + strandat 788.461 kb on + strandat 788.461 kb on + strandat 788.462 kb on - strandat 788.462 kb on - strandat 788.462 kb on - strandat 788.462 kb on - strandat 788.525 kb on + strandat 788.618 kb on - strandat 788.653 kb on - strandat 788.721 kb on + strandat 788.721 kb on + strandat 788.722 kb on - strandat 788.722 kb on - strandat 788.742 kb on - strandat 788.898 kb on + strand, within PP_0675at 788.898 kb on + strand, within PP_0675at 789.036 kb on + strand, within PP_0675at 789.036 kb on + strand, within PP_0675at 789.228 kb on + strand, within PP_0675at 789.256 kb on + strand, within PP_0675at 789.257 kb on - strand, within PP_0675at 789.313 kb on - strand, within PP_0675at 789.313 kb on - strand, within PP_0675at 789.313 kb on - strand, within PP_0675at 789.367 kb on - strand, within PP_0675at 789.414 kb on + strand, within PP_0675at 789.415 kb on - strand, within PP_0675at 789.452 kb on + strand, within PP_0675at 789.501 kb on + strand, within PP_0675at 789.502 kb on - strand, within PP_0675at 789.502 kb on - strand, within PP_0675at 789.502 kb on - strand, within PP_0675at 789.512 kb on + strand, within PP_0675at 789.512 kb on + strand, within PP_0675at 789.513 kb on - strand, within PP_0675at 789.563 kb on + strand, within PP_0675at 789.563 kb on + strand, within PP_0675at 789.564 kb on - strand, within PP_0675at 789.564 kb on - strand, within PP_0675at 789.570 kb on + strand, within PP_0675at 789.571 kb on - strand, within PP_0675at 789.571 kb on - strand, within PP_0675at 789.642 kb on - strand, within PP_0675at 789.642 kb on - strand, within PP_0675at 789.777 kb on - strand, within PP_0675at 789.785 kb on + strand, within PP_0675at 789.786 kb on - strand, within PP_0675at 789.786 kb on - strand, within PP_0675at 789.818 kb on + strand, within PP_0675at 789.836 kb on + strand, within PP_0675at 789.837 kb on - strand, within PP_0675at 790.012 kb on - strandat 790.041 kb on + strandat 790.042 kb on - strandat 790.042 kb on - strandat 790.203 kb on - strandat 790.203 kb on - strandat 790.391 kb on + strand, within PP_0676at 790.399 kb on + strand, within PP_0676at 790.452 kb on + strand, within PP_0676at 790.584 kb on + strand, within PP_0676at 790.584 kb on + strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.585 kb on - strand, within PP_0676at 790.671 kb on + strandat 790.671 kb on + strandat 790.671 kb on + strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.672 kb on - strandat 790.750 kb on + strandat 790.751 kb on - strandat 790.823 kb on - strand, within PP_0677at 790.892 kb on - strand, within PP_0677at 790.910 kb on - strand, within PP_0677at 790.917 kb on + strand, within PP_0677at 791.093 kb on + strandat 791.093 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM
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787,816 + PP_0674 0.56 -1.6
787,816 + PP_0674 0.56 -0.0
787,816 + PP_0674 0.56 -0.7
787,816 + PP_0674 0.56 -0.5
787,879 + PP_0674 0.60 +0.5
787,965 + PP_0674 0.65 -0.2
787,966 - PP_0674 0.65 -0.4
788,039 + PP_0674 0.69 +1.0
788,039 + PP_0674 0.69 +0.1
788,140 + PP_0674 0.75 +0.1
788,141 - PP_0674 0.75 +0.0
788,141 - PP_0674 0.75 +0.3
788,141 - PP_0674 0.75 +0.5
788,157 + PP_0674 0.76 +1.1
788,157 + PP_0674 0.76 +0.4
788,161 + PP_0674 0.77 +0.2
788,161 + PP_0674 0.77 +0.8
788,161 + PP_0674 0.77 +0.3
788,161 + PP_0674 0.77 +0.6
788,161 + PP_0674 0.77 +0.5
788,161 + PP_0674 0.77 -0.3
788,161 + PP_0674 0.77 +0.4
788,162 - PP_0674 0.77 -0.3
788,162 - PP_0674 0.77 +0.1
788,162 - PP_0674 0.77 -0.5
788,162 - PP_0674 0.77 +0.3
788,162 - PP_0674 0.77 -0.0
788,457 + +1.1
788,458 - +0.5
788,461 + +1.3
788,461 + +0.5
788,461 + -0.2
788,461 + +1.4
788,462 - +0.2
788,462 - -0.7
788,462 - -0.2
788,462 - +0.1
788,525 + +0.9
788,618 - -0.2
788,653 - -0.5
788,721 + +0.0
788,721 + -1.0
788,722 - -0.4
788,722 - +0.2
788,742 - -0.2
788,898 + PP_0675 0.10 -0.2
788,898 + PP_0675 0.10 +0.3
789,036 + PP_0675 0.20 -0.8
789,036 + PP_0675 0.20 -0.6
789,228 + PP_0675 0.34 -0.5
789,256 + PP_0675 0.37 +0.0
789,257 - PP_0675 0.37 +0.8
789,313 - PP_0675 0.41 -0.1
789,313 - PP_0675 0.41 +0.5
789,313 - PP_0675 0.41 +0.2
789,367 - PP_0675 0.45 -1.1
789,414 + PP_0675 0.48 +0.2
789,415 - PP_0675 0.48 -0.8
789,452 + PP_0675 0.51 +0.0
789,501 + PP_0675 0.55 -0.2
789,502 - PP_0675 0.55 -0.1
789,502 - PP_0675 0.55 +0.1
789,502 - PP_0675 0.55 -0.9
789,512 + PP_0675 0.55 -0.6
789,512 + PP_0675 0.55 -0.2
789,513 - PP_0675 0.56 -0.1
789,563 + PP_0675 0.59 +1.8
789,563 + PP_0675 0.59 -0.4
789,564 - PP_0675 0.59 -0.8
789,564 - PP_0675 0.59 +0.4
789,570 + PP_0675 0.60 -0.4
789,571 - PP_0675 0.60 +0.4
789,571 - PP_0675 0.60 -0.2
789,642 - PP_0675 0.65 -0.6
789,642 - PP_0675 0.65 -2.0
789,777 - PP_0675 0.75 +0.3
789,785 + PP_0675 0.76 +0.7
789,786 - PP_0675 0.76 -0.2
789,786 - PP_0675 0.76 -1.3
789,818 + PP_0675 0.78 -0.4
789,836 + PP_0675 0.79 -0.0
789,837 - PP_0675 0.80 -0.2
790,012 - +0.5
790,041 + -0.3
790,042 - -0.1
790,042 - -0.5
790,203 - -0.9
790,203 - +0.4
790,391 + PP_0676 0.44 -1.7
790,399 + PP_0676 0.46 +0.1
790,452 + PP_0676 0.56 -0.5
790,584 + PP_0676 0.83 -0.2
790,584 + PP_0676 0.83 -0.7
790,585 - PP_0676 0.83 -0.7
790,585 - PP_0676 0.83 +0.9
790,585 - PP_0676 0.83 -0.4
790,585 - PP_0676 0.83 -0.6
790,585 - PP_0676 0.83 +0.3
790,671 + +0.8
790,671 + +0.5
790,671 + -1.5
790,672 - -0.9
790,672 - +0.2
790,672 - -0.7
790,672 - -0.2
790,672 - -0.9
790,672 - +1.8
790,750 + +0.3
790,751 - +0.7
790,823 - PP_0677 0.24 -0.1
790,892 - PP_0677 0.43 +1.3
790,910 - PP_0677 0.48 +1.5
790,917 + PP_0677 0.50 -0.6
791,093 + -0.5
791,093 + -1.1

Or see this region's nucleotide sequence