Experiment: mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt PP_0586 and PP_0587 are separated by 52 nucleotides PP_0587 and PP_0588 are separated by 145 nucleotides PP_0588 and PP_0589 are separated by 107 nucleotides PP_0589 and PP_5446 are separated by 4 nucleotides PP_5446 and PP_0590 are separated by 450 nucleotides
PP_0586: PP_0586 - cadmium translocating P-type ATPase, at 683,847 to 686,246
_0586
PP_0587: PP_0587 - conserved exported protein of unknown function, at 686,299 to 686,685
_0587
PP_0588: PP_0588 - putative copper-binding chaperone, at 686,831 to 687,028
_0588
PP_0589: PP_0589 - Bcr/CflA family multidrug resistance transporter, at 687,136 to 688,317
_0589
PP_5446: PP_5446 - protein of unknown function, at 688,322 to 688,504
_5446
PP_0590: PP_0590 - Transcriptional regulator, ArsR family, at 688,955 to 689,668
_0590
Position (kb) 687
688
689 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 686.227 kb on + strand at 686.227 kb on + strand at 686.227 kb on + strand at 686.227 kb on + strand at 686.228 kb on - strand at 686.228 kb on - strand at 686.228 kb on - strand at 686.303 kb on + strand at 686.336 kb on + strand at 686.336 kb on + strand at 686.358 kb on - strand, within PP_0587 at 686.410 kb on + strand, within PP_0587 at 686.410 kb on + strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.411 kb on - strand, within PP_0587 at 686.412 kb on + strand at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.412 kb on + strand, within PP_0587 at 686.413 kb on - strand, within PP_0587 at 686.538 kb on - strand, within PP_0587 at 686.593 kb on + strand, within PP_0587 at 686.600 kb on + strand, within PP_0587 at 686.601 kb on - strand, within PP_0587 at 686.601 kb on - strand, within PP_0587 at 686.824 kb on - strand at 686.824 kb on - strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.847 kb on + strand at 686.848 kb on - strand at 687.009 kb on - strand at 687.098 kb on + strand at 687.117 kb on - strand at 687.125 kb on - strand at 687.202 kb on + strand at 687.202 kb on + strand at 687.202 kb on + strand at 687.203 kb on - strand at 687.278 kb on - strand at 687.278 kb on - strand, within PP_0589 at 687.294 kb on + strand, within PP_0589 at 687.311 kb on - strand, within PP_0589 at 687.363 kb on + strand, within PP_0589 at 687.397 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.693 kb on + strand, within PP_0589 at 687.694 kb on - strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.808 kb on + strand, within PP_0589 at 687.811 kb on - strand, within PP_0589 at 687.844 kb on + strand, within PP_0589 at 687.866 kb on - strand at 687.883 kb on - strand, within PP_0589 at 687.900 kb on + strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 687.980 kb on - strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.065 kb on + strand, within PP_0589 at 688.175 kb on + strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.176 kb on - strand, within PP_0589 at 688.206 kb on - strand at 688.206 kb on - strand at 688.451 kb on + strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.452 kb on - strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.473 kb on + strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.474 kb on - strand, within PP_5446 at 688.502 kb on + strand at 688.502 kb on + strand at 688.503 kb on - strand at 688.503 kb on - strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.555 kb on + strand at 688.587 kb on - strand at 688.639 kb on - strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.793 kb on + strand at 688.817 kb on + strand at 688.817 kb on + strand at 688.818 kb on - strand at 688.859 kb on + strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.860 kb on - strand at 688.861 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.946 kb on + strand at 688.947 kb on - strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.948 kb on + strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.949 kb on - strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.972 kb on + strand at 688.973 kb on - strand at 688.973 kb on - strand at 688.973 kb on - strand at 689.071 kb on - strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.165 kb on + strand, within PP_0590 at 689.166 kb on - strand, within PP_0590 at 689.202 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.220 kb on + strand, within PP_0590 at 689.221 kb on - strand, within PP_0590 at 689.242 kb on + strand, within PP_0590
Per-strain Table
Position Strand Gene LocusTag Fraction mixed (C)s Trisodium citrate 10 mM and L-Meta-tyrosine 10 mM remove 686,227 + -1.0 686,227 + +0.1 686,227 + -0.2 686,227 + -0.2 686,228 - -0.4 686,228 - +1.3 686,228 - -0.5 686,303 + -0.1 686,336 + -0.4 686,336 + +0.2 686,358 - PP_0587 0.15 -0.1 686,410 + PP_0587 0.29 +0.0 686,410 + PP_0587 0.29 -0.4 686,411 - PP_0587 0.29 +2.1 686,411 - PP_0587 0.29 -0.5 686,411 - PP_0587 0.29 +1.6 686,412 + +0.7 686,412 + PP_0587 0.29 -0.0 686,412 + PP_0587 0.29 -0.7 686,412 + PP_0587 0.29 +0.1 686,412 + PP_0587 0.29 -0.8 686,412 + PP_0587 0.29 -0.4 686,413 - PP_0587 0.29 -0.5 686,538 - PP_0587 0.62 +1.1 686,593 + PP_0587 0.76 -0.6 686,600 + PP_0587 0.78 -0.6 686,601 - PP_0587 0.78 -0.4 686,601 - PP_0587 0.78 -0.2 686,824 - -0.5 686,824 - -0.5 686,847 + -0.4 686,847 + -0.3 686,847 + -0.1 686,848 - -1.0 687,009 - -0.6 687,098 + -0.3 687,117 - -0.7 687,125 - -1.0 687,202 + +0.5 687,202 + -2.1 687,202 + -2.2 687,203 - -1.7 687,278 - +0.6 687,278 - PP_0589 0.12 -1.7 687,294 + PP_0589 0.13 -0.9 687,311 - PP_0589 0.15 -2.3 687,363 + PP_0589 0.19 -0.6 687,397 + PP_0589 0.22 -1.2 687,693 + PP_0589 0.47 -0.7 687,693 + PP_0589 0.47 -2.4 687,693 + PP_0589 0.47 -1.8 687,693 + PP_0589 0.47 +0.1 687,693 + PP_0589 0.47 -1.4 687,693 + PP_0589 0.47 -1.2 687,694 - PP_0589 0.47 -1.3 687,808 + PP_0589 0.57 -2.5 687,808 + PP_0589 0.57 -0.7 687,811 - PP_0589 0.57 -2.3 687,844 + PP_0589 0.60 -2.6 687,866 - +0.1 687,883 - PP_0589 0.63 -2.5 687,900 + PP_0589 0.65 -3.2 687,980 - PP_0589 0.71 -2.1 687,980 - PP_0589 0.71 -1.8 688,065 + PP_0589 0.79 -1.2 688,065 + PP_0589 0.79 -1.7 688,175 + PP_0589 0.88 -0.6 688,176 - PP_0589 0.88 -2.0 688,176 - PP_0589 0.88 -2.0 688,206 - -2.1 688,206 - -3.2 688,451 + PP_5446 0.70 -0.0 688,452 - PP_5446 0.71 -0.7 688,452 - PP_5446 0.71 -0.5 688,473 + PP_5446 0.83 -0.7 688,473 + PP_5446 0.83 -0.8 688,473 + PP_5446 0.83 +0.7 688,473 + PP_5446 0.83 -0.1 688,473 + PP_5446 0.83 -1.2 688,473 + PP_5446 0.83 +0.3 688,474 - PP_5446 0.83 +0.0 688,474 - PP_5446 0.83 +0.4 688,474 - PP_5446 0.83 -0.2 688,502 + -0.9 688,502 + -0.2 688,503 - -0.8 688,503 - -0.8 688,555 + -0.1 688,555 + -0.2 688,555 + -0.1 688,555 + -0.7 688,587 - -1.0 688,639 - +0.7 688,793 + -1.2 688,793 + +0.2 688,793 + +0.4 688,793 + -0.9 688,817 + -0.1 688,817 + -2.0 688,818 - +0.4 688,859 + -0.6 688,860 - +0.8 688,860 - -0.3 688,860 - -0.3 688,861 + +1.0 688,946 + -1.1 688,946 + -0.1 688,946 + +1.4 688,946 + +1.0 688,946 + -1.6 688,947 - -0.2 688,948 + +0.0 688,948 + +0.7 688,948 + +0.9 688,948 + +0.5 688,948 + -0.5 688,948 + -0.7 688,949 - -0.7 688,949 - -2.1 688,949 - -1.2 688,949 - +0.7 688,949 - +0.5 688,949 - -0.3 688,949 - +0.0 688,949 - +0.7 688,972 + +0.0 688,972 + -0.3 688,972 + +0.8 688,973 - -0.3 688,973 - +0.3 688,973 - +0.8 689,071 - PP_0590 0.16 -0.3 689,165 + PP_0590 0.29 +1.0 689,165 + PP_0590 0.29 +0.6 689,165 + PP_0590 0.29 -0.1 689,166 - PP_0590 0.30 -0.4 689,202 + PP_0590 0.35 -0.6 689,220 + PP_0590 0.37 +0.1 689,220 + PP_0590 0.37 -0.1 689,221 - PP_0590 0.37 +0.5 689,242 + PP_0590 0.40 +0.2
Or see this region's nucleotide sequence